Gene
| Gene Model ID | pfu_aug2.0_245.1_17176 |
|---|---|
| Locus | scaffold245.1 : 257830 ... 272903 : - |
| To GenomeBrowser | scaffold245.1:257830..272903 |
| Genes list of scaffold | scaffold245.1 |
| Synonym | pfu_aug1.0_7061.1_52876 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| probable tubulin polyglutamylase ttll9-like | GO:0005524 GO:0005737 GO:0005874 GO:0005929 GO:0006464 GO:0016874 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_245.1_17176.t2 | 1 | 1 | TTL | 78 | 179 | 5.6e-23 | 81.2 | 1.5e-26 | 7.5e-23 | 80.8 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_245.1_17176.t2 | gi|676450512|ref|XP_009052402.1| | hypothetical protein LOTGIDRAFT_214448 [Lottia gigantea] | 0.0 |
| pfu_aug2.0_245.1_17176.t2 | gi|573903783|ref|XP_006639614.1| | PREDICTED: probable tubulin polyglutamylase TTLL9-like [Lepisosteus oculatus] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_245.1_17176.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_245.1_17176.t1 atgtctaaggcaaccagggttcctggttatatgcaaagcaaaggaaacagaaatccaagaggaattattggggacagaga aatcagatacaaatgctccttacagaatacgatactagatgtgctccggggacgaccaggctggcaggaggtaccaggtc aaaatgctattcaacaaaatttaacacccaatgcaaaaactcccggtcagcaagtcacaggttcacagccagggggcgcc actagtaaatcgggaacagggacgacaaacacgcaatcttccaccgctactagtgggagacaaagttttcaaagcattcc ccctattactagaaacagtgacggtgactgggatttctattggtgtgacagggaatggcttcaccagaattacgatacaa tgttcctacatgagcaccagaaaatacttcacttcagaaaccactacgagcttacaaggaaaaacttgatggtaaagaat ctcaagagattgaagaagcagacagaacgagaacttggcaaggctgaaggtgtcaatttcgaattcttcccaacgacata tgaattgccttctgagtaccatatatttgtggaggagtttaagaagaaccctggtattatatggatcatgaagcccgcgg ctagggcccagggtcggggaatcttcctctttaggcgcctcaaggacatcacggactggaaaaaagacaaacagacagac gaacagaacaaaaactgtatgcccctgaatcttgggcataaaaagtcttga |
|
| Transcript ID | pfu_aug2.0_245.1_17176.t2 |
| Definition | - |
>pfu_aug2.0_245.1_17176.t2 atgtctaaggcaaccagggttcctggttatatgcaaagcaaaggaaacagaaatccaagaggaattattggggacagaga aatcagatacaaatgctccttacagaatacgatactagatgtgctccggggacgaccaggctggcaggaggtaccaggtg acggtgactgggatttctattggtgtgacagggaatggcttcaccagaattacgatacaatgttcctacatgagcaccag aaaatacttcacttcagaaaccactacgagcttacaaggaaaaacttgatggtaaagaatctcaagagattgaagaagca gacagaacgagaacttggcaaggctgaaggtgtcaatttcgaattcttcccaacgacatatgaattgccttctgagtacc atatatttgtggaggagtttaagaagaaccctggtattatatggatcatgaagcccgcggctagggcccagggtcgggga atcttcctctttaggcgcctcaaggacatcacggactggaaaaaagacaaacagacagacgaacagaacaaaaactgtat gcccctgaatcttgggcataaaaagtcttga |
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Protein
| Protein ID | pfu_aug2.0_245.1_17176.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_245.1_17176.t1 MSKATRVPGYMQSKGNRNPRGIIGDREIRYKCSLQNTILDVLRGRPGWQEVPGQNAIQQNLTPNAKTPGQQVTGSQPGGA TSKSGTGTTNTQSSTATSGRQSFQSIPPITRNSDGDWDFYWCDREWLHQNYDTMFLHEHQKILHFRNHYELTRKNLMVKN LKRLKKQTERELGKAEGVNFEFFPTTYELPSEYHIFVEEFKKNPGIIWIMKPAARAQGRGIFLFRRLKDITDWKKDKQTD EQNKNCMPLNLGHKKS |
|
| Protein ID | pfu_aug2.0_245.1_17176.t2 |
| Definition | - |
>pfu_aug2.0_245.1_17176.t2 MSKATRVPGYMQSKGNRNPRGIIGDREIRYKCSLQNTILDVLRGRPGWQEVPGDGDWDFYWCDREWLHQNYDTMFLHEHQ KILHFRNHYELTRKNLMVKNLKRLKKQTERELGKAEGVNFEFFPTTYELPSEYHIFVEEFKKNPGIIWIMKPAARAQGRG IFLFRRLKDITDWKKDKQTDEQNKNCMPLNLGHKKS |
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