Gene
| Gene Model ID | pfu_aug2.0_2490.1_02149 |
|---|---|
| Locus | scaffold2490.1 : 42056 ... 64452 : + |
| To GenomeBrowser | scaffold2490.1:42056..64452 |
| Genes list of scaffold | scaffold2490.1 |
| Synonym | pfu_aug1.0_5690.1_67298 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_2490.1_02149.t1 | 3 | 1 | SBP_bac_3 | 31 | 53 | 1.7e-11 | 43.8 | 0.83 | 3100.0 | -2.9 |
| pfu_aug2.0_2490.1_02149.t1 | 1 | 1 | ANF_receptor | 63 | 394 | 2.29999e-40 | 138.4 | 8.96831e-44 | 3.4e-40 | 137.9 |
| pfu_aug2.0_2490.1_02149.t1 | 3 | 2 | SBP_bac_3 | 439 | 485 | 1.7e-11 | 43.8 | 2.8e-06 | 0.01 | 15.0 |
| pfu_aug2.0_2490.1_02149.t1 | 1 | 1 | Lig_chan-Glu_bd | 448 | 509 | 8.8e-13 | 48.0 | 5.7e-16 | 2.1e-12 | 46.8 |
| pfu_aug2.0_2490.1_02149.t1 | 1 | 1 | Lig_chan | 524 | 740 | 1.5e-26 | 92.9 | 8.3e-30 | 3.1e-26 | 91.8 |
| pfu_aug2.0_2490.1_02149.t1 | 3 | 3 | SBP_bac_3 | 556 | 705 | 1.7e-11 | 43.8 | 1.3e-09 | 4.8e-06 | 25.9 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_2490.1_02149.t1 | gi|751234672|ref|XP_011171078.1| | PREDICTED: glutamate receptor ionotropic, kainate 3-like [Solenopsis invicta] | 0.0 |
| pfu_aug2.0_2490.1_02149.t1 | gi|759186135|ref|XP_011381143.1| | PREDICTED: glutamate receptor ionotropic, kainate 5 [Pteropus vampyrus] | 0.0 |
| pfu_aug2.0_2490.1_02149.t1 | gi|674105966|ref|XP_008824236.1| | PREDICTED: glutamate receptor ionotropic, kainate 4 isoform X3 [Nannospalax galili] | 0.0 |
| pfu_aug2.0_2490.1_02149.t1 | gi|635018554|ref|XP_008019416.1| | PREDICTED: glutamate receptor ionotropic, kainate 4 isoform X4 [Chlorocebus sabaeus] | 0.0 |
| pfu_aug2.0_2490.1_02149.t1 | gi|676465049|ref|XP_009057118.1| | hypothetical protein LOTGIDRAFT_233226 [Lottia gigantea] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_2490.1_02149.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_2490.1_02149.t1 atggacgttttatctctttacttggtgatactaacattcctgtggggagtaattggggtgaatcctgaggagacactcag cttggtgagggtcccgggattcttttacaaagacgacacggacttgctgagggctttccaatggacattcacaaagttaa atgttagaaccggatacgatatatgtaatgtccggatcggtggtgccgaatgttatgtaccaagtacatccaaaatacgc tttaaagacagcttcgaagtttcaaagaaagtctgccaggaagtggaagccggaagtaaagtcctgtttggacccaacat ccggtcgtccagtggcatagtcaattcgattgcaagctctttaagcattccacatattcaatttcattgggagccacatg atatagctacagacacacacggcccacgtagaattcccatgacaataaacgtctatccacattacctgaagttggcggag gcccacgccgacctgatccgacactggcagtggaacaagtttacagttatttaccaggacaatgacagtttgatacgatt acaaaaagtactgcaactatccagtgagaaaggtatgaacgtcacaatacgcaaaatggacaaaaacccaaacaaccatt ccaaactgttgaaggaaataggacttagggtggaaaccaggattgtggtcgactgtagcatcaacgaaatagaacatttc ttacagacggctaaagataaaagggttttggacgagtaccgccattttcacttcacaacgctggacctatctctggtgaa catggaacctttcatagactccggtgccaatatcacagctttcagaataattaatcctgatagtaaactcgtgactcaaa acatggcagattggaggaaacaatacatcattgattctcaaggaactaaaactgttagtacaaagctggcgatgctccac gacgctgtacatttactggatatagccaccatacactacattgataagttaggacgtcttgattacagtacaccactcag ctgtagcaaaactgacacgtggtctcaaggaacaagcttcatgaactaccttaagacagttgtattctatgggatgacag gtcaagttcagtttaacaactatggtgtcagagacaacttcacaatggaaatcattacgccaattcatcataatgggaca ataaagataggagaatggcattctttaaagttaccaaatgaaaccgggattctaataacaagatcagaggaggaaatccg aaacgatacacttgaaaaactaaagcacaaaacactacgggtggtaacaaaaactgatgacccttatgtatttaacaagg agagaaaccctgatggtagcattaaatacacgggctttgccatagatatcttggatagagtagcagagagtctgaacttt tcatacgagatttatatggatgcacccgggtatgggaactgtgcctcaccaggccactgtgatggtatggtgaaggaact tgtcaatcatagtgctgatctggcgggatatggtcattatccatatttgtcattttttccaggtagtgatttgtcccctg gtgcttcctccaccaggatagttgctatctgttggtggttctttaccatgataatggtgtcatcctatactgccaacctg gcagccttcctcaccatgaaaggactagagacaagcatcaaaaagatagatgatctccccaaacagtctgatatcaagta tggtacgctggcaaaaggaagtactaatgacttctttcggttttcacgagatgtatccacaacataccagaacgtatgga atgttatgcaaggctcccctgatgtcttagtaaacaatagtaaattggggatccagaaggttttgaatgaaaactacgct ttctttgctgaatccacaacaatagactatgtggttcagagggaatgtaagctaactcaagtaggaggctggttaaactc cataggatatggtatagccttaccagaagattccccatatagagatgaaatatcacaagagatactacgtcttagagagg aacaagtcatagacgagctctacaactattggtggaaagaaaaagatggcggcggaaattgtattaaagaaaaggaggag gataaaggctcgctaagatttgagaatgtagctggagtgtttgtagtactactgatgggctcagtggcgggaatattttt tgctttattagaattctgttggacatcgcgaaaattcgcaaagaaaaatcagcagcgacaacggaaatatgctccagcaa agaaagaaaggcaacaaattaatccctgtgtcaagttggcaacgggaaccgctaggctggatggggcaggtaattag |
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Protein
| Protein ID | pfu_aug2.0_2490.1_02149.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_2490.1_02149.t1 MDVLSLYLVILTFLWGVIGVNPEETLSLVRVPGFFYKDDTDLLRAFQWTFTKLNVRTGYDICNVRIGGAECYVPSTSKIR FKDSFEVSKKVCQEVEAGSKVLFGPNIRSSSGIVNSIASSLSIPHIQFHWEPHDIATDTHGPRRIPMTINVYPHYLKLAE AHADLIRHWQWNKFTVIYQDNDSLIRLQKVLQLSSEKGMNVTIRKMDKNPNNHSKLLKEIGLRVETRIVVDCSINEIEHF LQTAKDKRVLDEYRHFHFTTLDLSLVNMEPFIDSGANITAFRIINPDSKLVTQNMADWRKQYIIDSQGTKTVSTKLAMLH DAVHLLDIATIHYIDKLGRLDYSTPLSCSKTDTWSQGTSFMNYLKTVVFYGMTGQVQFNNYGVRDNFTMEIITPIHHNGT IKIGEWHSLKLPNETGILITRSEEEIRNDTLEKLKHKTLRVVTKTDDPYVFNKERNPDGSIKYTGFAIDILDRVAESLNF SYEIYMDAPGYGNCASPGHCDGMVKELVNHSADLAGYGHYPYLSFFPGSDLSPGASSTRIVAICWWFFTMIMVSSYTANL AAFLTMKGLETSIKKIDDLPKQSDIKYGTLAKGSTNDFFRFSRDVSTTYQNVWNVMQGSPDVLVNNSKLGIQKVLNENYA FFAESTTIDYVVQRECKLTQVGGWLNSIGYGIALPEDSPYRDEISQEILRLREEQVIDELYNYWWKEKDGGGNCIKEKEE DKGSLRFENVAGVFVVLLMGSVAGIFFALLEFCWTSRKFAKKNQQRQRKYAPAKKERQQINPCVKLATGTARLDGAGN |
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