Gene
| Gene Model ID | pfu_aug2.0_2495.1_18838 |
|---|---|
| Locus | scaffold2495.1 : 415 ... 43315 : - |
| To GenomeBrowser | scaffold2495.1:415..43315 |
| Genes list of scaffold | scaffold2495.1 |
| Synonym | pfu_aug1.0_1182.1_51219 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_2495.1_18838.t1 | 3 | 1 | AAA_11 | 109 | 142 | 1.3e-39 | 136.2 | 2.3 | 3300.0 | -2.7 |
| pfu_aug2.0_2495.1_18838.t1 | 3 | 2 | AAA_11 | 325 | 415 | 1.3e-39 | 136.2 | 1.2 | 1700.0 | -1.7 |
| pfu_aug2.0_2495.1_18838.t1 | 2 | 1 | RNB | 540 | 623 | 8.40779e-45 | 153.5 | 4.3e-23 | 6.4e-20 | 71.6 |
| pfu_aug2.0_2495.1_18838.t1 | 2 | 2 | RNB | 624 | 845 | 8.40779e-45 | 153.5 | 7.8e-26 | 1.2e-22 | 80.7 |
| pfu_aug2.0_2495.1_18838.t1 | 3 | 3 | AAA_11 | 1332 | 1569 | 1.3e-39 | 136.2 | 8.60397e-43 | 1.3e-39 | 136.2 |
| pfu_aug2.0_2495.1_18838.t1 | 2 | 1 | AAA_30 | 1332 | 1364 | 1.1e-09 | 38.1 | 8.0e-07 | 0.0012 | 18.4 |
| pfu_aug2.0_2495.1_18838.t1 | 2 | 1 | AAA_19 | 1337 | 1399 | 2.3e-08 | 33.6 | 2.6e-10 | 3.8e-07 | 29.7 |
| pfu_aug2.0_2495.1_18838.t1 | 3 | 1 | Viral_helicase1 | 1349 | 1405 | 1.2e-06 | 28.2 | 0.042 | 62.0 | 2.9 |
| pfu_aug2.0_2495.1_18838.t1 | 3 | 2 | Viral_helicase1 | 1517 | 1563 | 1.2e-06 | 28.2 | 0.00032 | 0.48 | 9.9 |
| pfu_aug2.0_2495.1_18838.t1 | 2 | 2 | AAA_30 | 1528 | 1565 | 1.1e-09 | 38.1 | 2.3e-06 | 0.0034 | 16.9 |
| pfu_aug2.0_2495.1_18838.t1 | 1 | 1 | AAA_12 | 1577 | 1782 | 0.0 | 158.0 | 0.0 | 0.0 | 156.8 |
| pfu_aug2.0_2495.1_18838.t1 | 2 | 2 | AAA_19 | 1673 | 1709 | 2.3e-08 | 33.6 | 0.26 | 380.0 | 0.9 |
| pfu_aug2.0_2495.1_18838.t1 | 3 | 3 | Viral_helicase1 | 1694 | 1782 | 1.2e-06 | 28.2 | 0.00013 | 0.19 | 11.1 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_2495.1_18838.t1 | gi|723535936|ref|XP_010298223.1| | PREDICTED: helicase with zinc finger domain 2 [Balearica regulorum gibbericeps] | 0.0 |
| pfu_aug2.0_2495.1_18838.t1 | gi|699608872|ref|XP_009872829.1| | PREDICTED: LOW QUALITY PROTEIN: helicase with zinc finger domain 2 [Apaloderma vittatum] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_2495.1_18838.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_2495.1_18838.t1 atgacagactgtaagaccatacagacagacctggacacacttcaatcttgggagggggagtgggacatggagttcaaccc agatcttaggtggaacagccatgtaaacagtatggtaagtaaagctaatagatccctaggctttataaggagaaatattg agaccaagcctcagactatcagagctactgcctataaaacgctggtaagaccgcaactggaatatgcttcttgcgcattg gatccccacaccagagaactgtccgacaaaattgagatggtgcagcgcagagctgcaagatcgacggacaaacatcatga aaggaaatcacttcaatgtatggatggagaaatggaatcgaatgacaagaaatgttcatctattgacttcagctggatta aggggacaaatattactgtacctgagaaacagagggcaaagcagcaagaaataatgagcagccatacaaaaaagaagaaa cgctcaaggcctaaaagaatggaagtagtacaaccagaaccagaacctgctaagaaaaaggaagaagcaaaagatggcag aagagcagcaaatttgaaaaccagtagaacttctgcagaggaaagtaatggtttacatcgagaaaaaggagttcttccag ttccgcagaatgcagagaaggatgattatgatattcagaattttgaaaaagacgatggcatggatgatacaccatttcta cttgatgaagatgatgctcagactgacttgcattcggcagaagatcttgtcagtattcatgatcaggtttcaagattaat gataaagggtatttcactcaaaagtcaatgtgtaaggtcattagctcagggtaactacaagtatgatgattacaatgaag acgaagtcactgatgcagaagatgatttactggaaaggcagccgaaaaagtttaagcgatgtattattcaaatcgaatct gcacataaagcaatttgcacaaatatggattcagctgatgaaatcaaagagatagaaatatcaggaagaagtaagtgtgg aaaaagcttcagtgaggatgaagtgctggttgaaatacttaaagaagaaggaaagaatcagaaagataactttataccaa ggttgtccaaaaggcccaatcaacagacaaaacaatgcaaagtttatggtgctgtgaagagaacacttaaaagaaataga ttttccgacgtcagtcatcctgttctagtatgtgtagtggatgaattcgaatgccatctgatgaaacctctttgtagaac aattccaaaattgtatgtacagaaacggggtgccaaagaaggtttcacagtagatatctacgagtacactcagagccgga agaccgtcacattcaaggaaaatatatcagtaccgtatgctgatcgccactcttttgttttccttgttgcatacatcaaa tgggatagatactatcccagaggagtagtccttcgctgcattcgtacatcaggatctttaatgaatggaataagtttgct aaagctaatacatagggtaccgggtcagtgcgaagaatcagtgctgaaggttgctacaagtacggcttccaatgaaacac tgaatgctgatgaaaataggaccgacttgtctggattagagactttcaccatagatccaaaagattcaactgatttggac gatgcgcttagtatagagaaattaccgaacgggttgtatcaagttggagtgcatatagctgacgtatcgtcagatattca gaaagacagcactattgacaaggcagcacaggaacgtttggtcacgttttacaccggacttgggtttgaagcaaatcata tgttgccaaatggaaagagcgattatttttcaaactctattcatgatctctatgatcttgcaataagcattagaaaaatt cgcctcagggaagaaatgtatagcccacaatcagatgaagacaacatggatgatttagataaccatgaactagcaaaaga tgcacagttattggtggaagagttcatgatccttgcgaatcagtttgtagggaaatttctcgtcgctttatttccagatt gcgttcctcttcgatgccaagatcctccaagtcaatacgaactcgaagaatggaaattgaggaacgaccagatatatgac gctgtcttgagaatccaaaggatactcgaaaatggaaaatccatatctaaattagacttgaaattaatgaggtacaacaa aatacttcccttccagaaatggatctggaacaaattacacgaagcagttgaatcagaagactataatcttgcttcctttc ttcttggatcggatgaatttcatccagaacaagctttggcgcttgtagaatggtttaaaattcaagagaagggctactac aaatgcagcggtagcattgatggtgcaaacgaagaatatttttctatgcatataatgcactatacacattttacctctcc aatcaggcgttatatagatgttatggtgcatagacttgtccacgccgctatcgaagggaatgattgcccatacacacaaa cagaagtccagagtttgtgtaagaatgtaaacgaaatctccagaagggcaaatatgtatcaacgcgaatgtatgactttg ttatgggcatacgatattcagaagaaacctgcccttttatatgtatttgcccacgacctgacggatgcaaatattggatt tcatgttcctctaaagaatgtttcttcacatagtaaaaagattccacttagtcaactaagtcccctgaaaaggccagaac tgaagaaagacagagaaactgctagggatcatgtagctgtcgtttggcagaagagaatttattcttttacaggatatgga ccaaaaacaaggcataagaaaaaagatgtaaagagaatagatccagatcagagagctgtcttccagcaaaagaggaaatg gtttcaaatcctgcaaatgcttgtgcatgatcacgtgacggatcttacaaaagactttttcgatatgaactatcatatga gctcgtcgtcgagagcacagttcaacacggaaatggacgtgtcatcagaggtccgggatggagaacttatccaacaaaca tgtgattttgagatgatattccatcatgctcaaattatttcagttcagtttatgactgcaccaataaagggagttcttac acctgtaccacaattgttggatttaacaaggaatgtgaagttttgcctagagcatatgagagatcctgttcaggtctttg aaagatacgcaacagagaaaattcgatcaaaatacgcaagctgcgcgcaatacctttccgttgttctaccattattgagg atggaatctgcaattactgcaatacaaagtgcaactgcctcaatcaatgaggtacctgtctcttttgacaacattggagg gcagttcactttgcttatgtctttctgtgacaggagagatatagatttcaattccatggcaatggattttcttgttactg gtaatgaggaagatgatgaagaaattgagtatgtcccaagttcagactatctttgtattcgttgtgacattcaagatggc gaaatgccgggtcagcgtgttgatgaagcgtgcacaccatataagagaatggtttggattggtcacggaaagaatgacaa aataaagcgaatgaagaagagaggcaaagttgcagtacattttcagcttaggaaaaatagtatgatgccaactccgaaaa tgcaaaataataataaacctgtaagatgctgtgtagagttacttcaaaaggcggaggtggaaaggagatctgacgctatc ttgcaataccttcccaaaggatcccagctagctatggctatagcacttggaaggaagccttcgcaaatgtcgaaacaaca tcttgattttgttaagtctgtcggtacagagccagaaatgttcatgacaaaacaatcaaagtaccccagaaacaatccaa agcaggctgaagctataagaaatgctcttgaacagagtttcagtcttattcagggcccaccaggaacggggaaaacgtac acaggagttaaacttattcacctgttctgcacaatgaatagactagccagggaggctggattgacacaaagacaacttgt attttgtggaccgtcaaacaagtccgtggacttggtagcaaaatggattttaaaagacaaagccccgtgcatggttcgag tctatggtagctcgatggaaaacatggactttccaattcctgggaaagtatttccaaaaaaggcacgatctagagatggg aaaccagatcgaaagttacaagaagtatcgctccatcacctcattagggccgaccataatcaacatgcaaaagagattcg acgctacgataagctatttagagaaaaccctgctttctccgacatagatgaaattaagaagtacaaatcgctcttgagca aagctgtgcaagaggaactgacattgtatgatgttatcttctgcacaacagcaatggcgaccaatcacaagtttctgaaa gggaccaaaggtaaaatataccaattgattattgacgaagcaggaatgtgcacagaacctgaatgtgttgctccaattat agccactcaggctaagcaagttgtgttgattggagaccacaaacagctaaggccgaccatcatgtgtcagtatgcaacag acttgggtctggctagatcccttttcgaacgctatgcaaacaaggctattttgctcaatatgcaatacaggatgcaccca aaaatctgtgaatttccgtcccaaacgttttacaaaggaaaactcaagacagatatgaaatatacatctgtgtggtacga aatggatccccttcgagtttggccagtatttggtacaccgcacgtgttctgccatgttgttggagcggaagaacatttaa cagtagctaccgaggaaggcaacgagctttctcgcagcaacaaagctgaagttgaagtagtggtgaagatagtcgctcat ctgttggacatcgagagggtgaaccaggagaaaattaatatcatgtctcagtacaatgctcaatgttacagcctgaagga cagtctgagagagaatggtctaatcaatctcaatatcaacactgtcgtagctagtcaaggtggagagtgggattacgtca tttttagcacagttcgatcattgcctcagtacagaatcgaaccaaggccgtcactaggttggtgcaaacagaacttgggg ttcatcacagacgctcatcagataaatgtagcacttactcgggcaagaaagggactcattatagttgatcatgaacagga catttcatga |
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Protein
| Protein ID | pfu_aug2.0_2495.1_18838.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_2495.1_18838.t1 MTDCKTIQTDLDTLQSWEGEWDMEFNPDLRWNSHVNSMVSKANRSLGFIRRNIETKPQTIRATAYKTLVRPQLEYASCAL DPHTRELSDKIEMVQRRAARSTDKHHERKSLQCMDGEMESNDKKCSSIDFSWIKGTNITVPEKQRAKQQEIMSSHTKKKK RSRPKRMEVVQPEPEPAKKKEEAKDGRRAANLKTSRTSAEESNGLHREKGVLPVPQNAEKDDYDIQNFEKDDGMDDTPFL LDEDDAQTDLHSAEDLVSIHDQVSRLMIKGISLKSQCVRSLAQGNYKYDDYNEDEVTDAEDDLLERQPKKFKRCIIQIES AHKAICTNMDSADEIKEIEISGRSKCGKSFSEDEVLVEILKEEGKNQKDNFIPRLSKRPNQQTKQCKVYGAVKRTLKRNR FSDVSHPVLVCVVDEFECHLMKPLCRTIPKLYVQKRGAKEGFTVDIYEYTQSRKTVTFKENISVPYADRHSFVFLVAYIK WDRYYPRGVVLRCIRTSGSLMNGISLLKLIHRVPGQCEESVLKVATSTASNETLNADENRTDLSGLETFTIDPKDSTDLD DALSIEKLPNGLYQVGVHIADVSSDIQKDSTIDKAAQERLVTFYTGLGFEANHMLPNGKSDYFSNSIHDLYDLAISIRKI RLREEMYSPQSDEDNMDDLDNHELAKDAQLLVEEFMILANQFVGKFLVALFPDCVPLRCQDPPSQYELEEWKLRNDQIYD AVLRIQRILENGKSISKLDLKLMRYNKILPFQKWIWNKLHEAVESEDYNLASFLLGSDEFHPEQALALVEWFKIQEKGYY KCSGSIDGANEEYFSMHIMHYTHFTSPIRRYIDVMVHRLVHAAIEGNDCPYTQTEVQSLCKNVNEISRRANMYQRECMTL LWAYDIQKKPALLYVFAHDLTDANIGFHVPLKNVSSHSKKIPLSQLSPLKRPELKKDRETARDHVAVVWQKRIYSFTGYG PKTRHKKKDVKRIDPDQRAVFQQKRKWFQILQMLVHDHVTDLTKDFFDMNYHMSSSSRAQFNTEMDVSSEVRDGELIQQT CDFEMIFHHAQIISVQFMTAPIKGVLTPVPQLLDLTRNVKFCLEHMRDPVQVFERYATEKIRSKYASCAQYLSVVLPLLR MESAITAIQSATASINEVPVSFDNIGGQFTLLMSFCDRRDIDFNSMAMDFLVTGNEEDDEEIEYVPSSDYLCIRCDIQDG EMPGQRVDEACTPYKRMVWIGHGKNDKIKRMKKRGKVAVHFQLRKNSMMPTPKMQNNNKPVRCCVELLQKAEVERRSDAI LQYLPKGSQLAMAIALGRKPSQMSKQHLDFVKSVGTEPEMFMTKQSKYPRNNPKQAEAIRNALEQSFSLIQGPPGTGKTY TGVKLIHLFCTMNRLAREAGLTQRQLVFCGPSNKSVDLVAKWILKDKAPCMVRVYGSSMENMDFPIPGKVFPKKARSRDG KPDRKLQEVSLHHLIRADHNQHAKEIRRYDKLFRENPAFSDIDEIKKYKSLLSKAVQEELTLYDVIFCTTAMATNHKFLK GTKGKIYQLIIDEAGMCTEPECVAPIIATQAKQVVLIGDHKQLRPTIMCQYATDLGLARSLFERYANKAILLNMQYRMHP KICEFPSQTFYKGKLKTDMKYTSVWYEMDPLRVWPVFGTPHVFCHVVGAEEHLTVATEEGNELSRSNKAEVEVVVKIVAH LLDIERVNQEKINIMSQYNAQCYSLKDSLRENGLINLNINTVVASQGGEWDYVIFSTVRSLPQYRIEPRPSLGWCKQNLG FITDAHQINVALTRARKGLIIVDHEQDIS |
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