Gene
| Gene Model ID | pfu_aug2.0_25.1_16725 |
|---|---|
| Locus | scaffold25.1 : 208531 ... 216900 : - |
| To GenomeBrowser | scaffold25.1:208531..216900 |
| Genes list of scaffold | scaffold25.1 |
| Synonym | pfu_aug1.0_42.1_07320 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_25.1_16725.t1 | 1 | 1 | Lectin_C | 69 | 176 | 5.0e-19 | 68.8 | 9.6e-23 | 7.1e-19 | 68.3 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_25.1_16725.t1 | gi|658852709|ref|XP_008408963.1| | PREDICTED: aggrecan core protein isoform X2 [Poecilia reticulata] | 1.0e-18 |
| pfu_aug2.0_25.1_16725.t1 | gi|658852707|ref|XP_008408961.1| | PREDICTED: aggrecan core protein isoform X1 [Poecilia reticulata] | 1.0e-18 |
| pfu_aug2.0_25.1_16725.t1 | gi|558203597|ref|XP_006132086.1| | PREDICTED: C-type lectin domain family 4 member G isoform X1 [Pelodiscus sinensis] | 2.0e-18 |
| pfu_aug2.0_25.1_16725.t1 | gi|558203602|ref|XP_006132087.1| | PREDICTED: C-type lectin domain family 4 member G isoform X2 [Pelodiscus sinensis] | 2.0e-18 |
Transcript
| Transcript ID | pfu_aug2.0_25.1_16725.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_25.1_16725.t1 atgcaacattccgtctctcctgcttatgatgttttggtttctcagctgatacggtacgccagggcatgttcccaaaatga agatttcatcattagagccaggcggcttgcaaatggctcgttagatctatgtccaactagtctaccacaagaccagtacc ttaaggtttttggaggcagatgttacagatacagaaatgacgaactaaactggcctcaggctaagtctcagtgttctact gaaggtggtcacctggcggagataccagactgggaaacacacaacgacctggaatacaatgctgatggtctgagaggtga cagggtgtggatagggcttaatgacatcaataaacgaggacgatggatatgggataatggaaattccatgtcatatacaa actgggacagtggccaaccggacacttgttcttcgtgtgaggagaaatgtgttttaatgagaatagatagaagtggaaaa tggcatgattacggctgctatacaactcataacccgttcatctgcgagtatgtattaccagatggggatgtagcccctgg gatggggatttttaaaattatttcaaatgataaggcaaatgttgagatgataaggaaaatattaagttcctttgcagata atgaattgatgtttggtatatga |
|
Protein
| Protein ID | pfu_aug2.0_25.1_16725.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_25.1_16725.t1 MQHSVSPAYDVLVSQLIRYARACSQNEDFIIRARRLANGSLDLCPTSLPQDQYLKVFGGRCYRYRNDELNWPQAKSQCST EGGHLAEIPDWETHNDLEYNADGLRGDRVWIGLNDINKRGRWIWDNGNSMSYTNWDSGQPDTCSSCEEKCVLMRIDRSGK WHDYGCYTTHNPFICEYVLPDGDVAPGMGIFKIISNDKANVEMIRKILSSFADNELMFGI |
|