Gene
| Gene Model ID | pfu_aug2.0_25.1_16726 |
|---|---|
| Locus | scaffold25.1 : 282881 ... 284340 : - |
| To GenomeBrowser | scaffold25.1:282881..284340 |
| Genes list of scaffold | scaffold25.1 |
| Synonym | NA |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| 5-hydroxytryptamine receptor 6 | GO:0044763 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_25.1_16726.t1 | 2 | 1 | 7TM_GPCR_Srx | 25 | 49 | 6.5e-08 | 32.0 | 1.5 | 5700.0 | -3.9 |
| pfu_aug2.0_25.1_16726.t1 | 2 | 2 | 7TM_GPCR_Srx | 77 | 264 | 6.5e-08 | 32.0 | 4.4e-11 | 1.6e-07 | 30.7 |
| pfu_aug2.0_25.1_16726.t1 | 1 | 1 | 7TM_GPCR_Srsx | 80 | 198 | 1.2e-06 | 27.8 | 1.8e-09 | 6.6e-06 | 25.4 |
| pfu_aug2.0_25.1_16726.t1 | 1 | 1 | 7tm_1 | 85 | 352 | 0.0 | 199.6 | 0.0 | 0.0 | 199.1 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_25.1_16726.t1 | gi|524898676|ref|XP_005105784.1| | PREDICTED: 5-hydroxytryptamine receptor 6-like [Aplysia californica] | 0.0 |
| pfu_aug2.0_25.1_16726.t1 | gi|260792206|ref|XP_002591107.1| | hypothetical protein BRAFLDRAFT_175032 [Branchiostoma floridae] | 0.0 |
| pfu_aug2.0_25.1_16726.t1 | gi|525020731|ref|XP_005057877.1| | PREDICTED: 5-hydroxytryptamine receptor 6 [Ficedula albicollis] | 0.0 |
| pfu_aug2.0_25.1_16726.t1 | gi|632983990|ref|XP_007908919.1| | PREDICTED: 5-hydroxytryptamine receptor 6 [Callorhinchus milii] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_25.1_16726.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_25.1_16726.t1 atggaatccgtaagtggtagtacagagattaataatatcaagaattttacgtcagtgaatcagaaatcaagtgtcatatc taaatttgaggaggcttctttcggaaatggagttttaagagcattagacggtcaagttgttttcatcgaagaagattttc aagatgttccaacagtaatggaatatgaatacacaagtcagcgtgtagtcattgggactgtgctatttttccttatattt ctaacaatttcaggtaacttgatagtcgtacttgcagttttatttcatcgaaaattgagatcagtatcaaacatgtttat tttatctctgagtttgacagacttatttgtcggtacaatagtgatgattcctgcggcgcttacagaaatattccaggaat ggattcttcatcctaagttttgttctatttggacgtctttcgatgttatgttgtgcagtgcatctattcttaacgtttgt ctgataagtatagatagatatattgccattatgacacctttaagataccggaccattatgaaccacaggaagaccttgat gatgctctgtggggcatggggtatagccattctgacttcctttgtgcccattgagaatggttggcacaatccagctgttc cctccttggagaatctgactctgttcactaaacgtcctcagtgtttgttcattatcagccgtccatacgccgtcaccgcc accagtgttactgttctcttgcctatagcagtcgctctcacattgtattacagagtatcaaaggaagcaaagagacaaac atttctagttggaactcttatcaccgcaggcaacgttttactcggacaaaatgtttcatcgaaaaacatcagggagccgt ttacgagaaaagcaactgtaacgttaggagtgattgttggagcgtatgttgtaacttggtcgcctttcctgtgtgctaat atcgcacagggattttgtgcttgtattccaaacaaagcttttgtggcaatagtatggttaggatggtgtaatagtctcat taatccaattatatatcctctgtttatgagagattttagaaaaatttacattagttttatacataaatgttgccctttcc ttgccaatgtcagggcatataaggtagaaagcaaatattctgatataccacaactacagaggagcatgtga |
|
Protein
| Protein ID | pfu_aug2.0_25.1_16726.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_25.1_16726.t1 MESVSGSTEINNIKNFTSVNQKSSVISKFEEASFGNGVLRALDGQVVFIEEDFQDVPTVMEYEYTSQRVVIGTVLFFLIF LTISGNLIVVLAVLFHRKLRSVSNMFILSLSLTDLFVGTIVMIPAALTEIFQEWILHPKFCSIWTSFDVMLCSASILNVC LISIDRYIAIMTPLRYRTIMNHRKTLMMLCGAWGIAILTSFVPIENGWHNPAVPSLENLTLFTKRPQCLFIISRPYAVTA TSVTVLLPIAVALTLYYRVSKEAKRQTFLVGTLITAGNVLLGQNVSSKNIREPFTRKATVTLGVIVGAYVVTWSPFLCAN IAQGFCACIPNKAFVAIVWLGWCNSLINPIIYPLFMRDFRKIYISFIHKCCPFLANVRAYKVESKYSDIPQLQRSM |
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