Gene
| Gene Model ID | pfu_aug2.0_25.1_16731 |
|---|---|
| Locus | scaffold25.1 : 444522 ... 452639 : + |
| To GenomeBrowser | scaffold25.1:444522..452639 |
| Genes list of scaffold | scaffold25.1 |
| Synonym | NA |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_25.1_16731.t1 | 1 | 1 | zf-RING_2 | 3 | 44 | 2.7e-08 | 33.4 | 4.0e-11 | 4.6e-08 | 32.7 |
| pfu_aug2.0_25.1_16731.t1 | 1 | 1 | zf-C3HC4_3 | 3 | 47 | 9.1e-07 | 28.4 | 1.1e-09 | 1.2e-06 | 28.0 |
| pfu_aug2.0_25.1_16731.t1 | 1 | 1 | zf-C3HC4_2 | 5 | 43 | 2.4e-06 | 27.4 | 3.4e-09 | 3.9e-06 | 26.7 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_25.1_16731.t1 | gi|302841161|ref|XP_002952126.1| | hypothetical protein VOLCADRAFT_92717 [Volvox carteri f. nagariensis] | 5.0e-07 |
| pfu_aug2.0_25.1_16731.t1 | gi|598000609|ref|XP_007334515.1| | hypothetical protein AGABI1DRAFT_132816 [Agaricus bisporus var. burnettii JB137-S8] | 4.0e-06 |
| pfu_aug2.0_25.1_16731.t1 | gi|544469262|ref|XP_005570648.1| | PREDICTED: PDZ domain-containing RING finger protein 4 isoform X1 [Macaca fascicularis] | 6.0e-06 |
| pfu_aug2.0_25.1_16731.t1 | gi|109096171|ref|XP_001089369.1| | PREDICTED: PDZ domain-containing RING finger protein 4 isoform 1 [Macaca mulatta] | 6.0e-06 |
| pfu_aug2.0_25.1_16731.t1 | gi|332206532|ref|XP_003252347.1| | PREDICTED: PDZ domain-containing RING finger protein 4 isoform X1 [Nomascus leucogenys] | 6.0e-06 |
Transcript
| Transcript ID | pfu_aug2.0_25.1_16731.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_25.1_16731.t1 atgacagatgaatgtacaatttgtctagagagagtttctttcccttgtacgtgccagccgtgtggtcacatttattgtgc tgactgtatttggtcttggatcatcaaatccagacattgtccacagtgcagagagtttgtaggtgatctccagtattctg ctaacgatattcaatcaaaaatgccgaaattcaggcgggacaactatgacttcaaaagagccatacagaaatatgtgatt ccgttcctcatcaaggcttcatacatactcctcctgctgatagtcctccgggcagtcttcgtagtctccaaggcccgttt aaccgctgacgacactacccctccccaatcaaccctcggcagtattgtgacattttttggagcctgtctttgggagatat taacgtcagttttctggcttgttttttacactctgacttttcctttgcaagtgattgtgcattttacggaatacttaaat acatttgtaaaagttctttcagaaatgttctgggttcttgtatacttaagcattcttacgtttgtattatggcactttgg agtttttaaacacctacatggctacttaaggtcaagaaacattatgtaa |
|
Protein
| Protein ID | pfu_aug2.0_25.1_16731.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_25.1_16731.t1 MTDECTICLERVSFPCTCQPCGHIYCADCIWSWIIKSRHCPQCREFVGDLQYSANDIQSKMPKFRRDNYDFKRAIQKYVI PFLIKASYILLLLIVLRAVFVVSKARLTADDTTPPQSTLGSIVTFFGACLWEILTSVFWLVFYTLTFPLQVIVHFTEYLN TFVKVLSEMFWVLVYLSILTFVLWHFGVFKHLHGYLRSRNIM |
|