Gene
| Gene Model ID | pfu_aug2.0_25.1_16735 |
|---|---|
| Locus | scaffold25.1 : 566687 ... 567986 : - |
| To GenomeBrowser | scaffold25.1:566687..567986 |
| Genes list of scaffold | scaffold25.1 |
| Synonym | pfu_aug1.0_10400.1_24737 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_25.1_16735.t1 | 2 | 1 | zf-C3HC4_3 | 14 | 62 | 3.7e-07 | 29.7 | 4.5e-10 | 3.7e-07 | 29.7 |
| pfu_aug2.0_25.1_16735.t1 | 3 | 1 | zf-RING_2 | 15 | 60 | 2.9e-07 | 30.1 | 3.6e-10 | 2.9e-07 | 30.1 |
| pfu_aug2.0_25.1_16735.t1 | 3 | 1 | zf-C3HC4_2 | 16 | 60 | 1.7e-07 | 31.1 | 2.1e-10 | 1.7e-07 | 31.1 |
| pfu_aug2.0_25.1_16735.t1 | 2 | 1 | zf-C3HC4 | 16 | 60 | 2.7e-07 | 30.1 | 3.3e-10 | 2.7e-07 | 30.1 |
| pfu_aug2.0_25.1_16735.t1 | 1 | 1 | zf-RING_UBOX | 16 | 58 | 5.7e-06 | 25.9 | 6.9e-09 | 5.7e-06 | 25.9 |
| pfu_aug2.0_25.1_16735.t1 | 2 | 2 | zf-C3HC4_3 | 99 | 132 | 3.7e-07 | 29.7 | 0.27 | 230.0 | 1.5 |
| pfu_aug2.0_25.1_16735.t1 | 2 | 2 | zf-C3HC4 | 101 | 132 | 2.7e-07 | 30.1 | 1.8 | 1500.0 | -1.1 |
| pfu_aug2.0_25.1_16735.t1 | 3 | 2 | zf-RING_2 | 101 | 132 | 2.9e-07 | 30.1 | 2.2 | 1800.0 | -1.2 |
| pfu_aug2.0_25.1_16735.t1 | 3 | 2 | zf-C3HC4_2 | 109 | 131 | 1.7e-07 | 31.1 | 2.9 | 2300.0 | -1.4 |
| pfu_aug2.0_25.1_16735.t1 | 3 | 3 | zf-C3HC4_2 | 163 | 191 | 1.7e-07 | 31.1 | 0.42 | 340.0 | 1.3 |
| pfu_aug2.0_25.1_16735.t1 | 3 | 3 | zf-RING_2 | 183 | 192 | 2.9e-07 | 30.1 | 0.47 | 390.0 | 0.9 |
Transcript
| Transcript ID | pfu_aug2.0_25.1_16735.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_25.1_16735.t1 atggctgttgatgaattgacaagtgtcatcgacaatcttacaacttgtaggatatgtatggactcatttagaactccgaa gaagttaccttgtttacacactttttgtgaagtatgttttcagaatttcatctcgacgagattcagctattataacggag gaataaactgccccacgtgtcaaacgttcgtaccgatacctggagatgcgtctcctcgtaattggtcgtccattcttcca actgatcatagattgatacgtcttatggatgctaaaaaaacaaaatcaaaaagaagaatttgcgctgcttgtgctagaaa aaacgaagtgatagatgcttactcttggtgtgttaactgtcaggaacaactttgtaatgaatgccatcatagtcattcag taaacaaggcttccctacatcataagttgattgaaattgatgaaaatttctcggatgatattcaacaacaaagcatcgag atgaattgtaaagaacacccaaccgaggaaataaaattgttttgcattacgcatgacatgtcatgctgcgtgatatgcgt acgtgaaattcatggcaattgtgaaaaagttcatattgataaatacgctgaacgtttgaagaattcagaggatctgaaga aactttccgaaggtctttatgctatgaaactgagtttcgaatcattacataaagataagagtgaaaataaaagaaagttg aaggcggacattgaacgtattagatcagacgtagaaaagttattagaacaaataactcaccgcatgagtgaactggtagc aaactttaggtctgaagtgtcaaatatcgaaatggaattcggacaagagataaaagaggaacaagacgagtttaatctct taattgatgaaatagaaaatcttcgaagccgtttgcagacatcaaaaagtcaagcctcaccatgccaattcatacaaacg ataaagcttttgtctgaagagaaaaagaaattggaaaagtacttgaaagaaaaattacgtgcattcacagaaancgaaca aataactcaccgcatgagtgaactgagcaaactttag |
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Protein
| Protein ID | pfu_aug2.0_25.1_16735.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_25.1_16735.t1 MAVDELTSVIDNLTTCRICMDSFRTPKKLPCLHTFCEVCFQNFISTRFSYYNGGINCPTCQTFVPIPGDASPRNWSSILP TDHRLIRLMDAKKTKSKRRICAACARKNEVIDAYSWCVNCQEQLCNECHHSHSVNKASLHHKLIEIDENFSDDIQQQSIE MNCKEHPTEEIKLFCITHDMSCCVICVREIHGNCEKVHIDKYAERLKNSEDLKKLSEGLYAMKLSFESLHKDKSENKRKL KADIERIRSDVEKLLEQITHRMSELVANFRSEVSNIEMEFGQEIKEEQDEFNLLIDEIENLRSRLQTSKSQASPCQFIQT IKLLSEEKKKLEKYLKEKLRAFTEXEQITHRMSELSKL |
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