Gene
| Gene Model ID | pfu_aug2.0_25.1_16740 |
|---|---|
| Locus | scaffold25.1 : 627237 ... 631173 : + |
| To GenomeBrowser | scaffold25.1:627237..631173 |
| Genes list of scaffold | scaffold25.1 |
| Synonym | pfu_aug1.0_11451.1_32058 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| tar dna-binding protein 43-like isoform x3 | GO:0000166 GO:0003677 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_25.1_16740.t1 | 2 | 1 | RRM_1 | 33 | 98 | 9.5e-25 | 86.0 | 6.5e-18 | 2.4e-14 | 52.6 |
| pfu_aug2.0_25.1_16740.t1 | 2 | 1 | RRM_6 | 33 | 98 | 6.2e-22 | 77.3 | 1.2e-14 | 4.6e-11 | 42.5 |
| pfu_aug2.0_25.1_16740.t1 | 2 | 1 | RRM_5 | 47 | 103 | 5.9e-09 | 35.6 | 1.4e-05 | 0.05 | 13.4 |
| pfu_aug2.0_25.1_16740.t1 | 2 | 2 | RRM_1 | 119 | 168 | 9.5e-25 | 86.0 | 3.3e-11 | 1.2e-07 | 31.2 |
| pfu_aug2.0_25.1_16740.t1 | 2 | 2 | RRM_6 | 119 | 172 | 6.2e-22 | 77.3 | 1.4e-11 | 5.1e-08 | 32.7 |
| pfu_aug2.0_25.1_16740.t1 | 2 | 2 | RRM_5 | 133 | 170 | 5.9e-09 | 35.6 | 1.1e-07 | 0.00041 | 20.1 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_25.1_16740.t1 | gi|665787434|ref|XP_008557392.1| | PREDICTED: TAR DNA-binding protein 43 isoform X3 [Microplitis demolitor] | 0.0 |
| pfu_aug2.0_25.1_16740.t1 | gi|665787432|ref|XP_008557383.1| | PREDICTED: TAR DNA-binding protein 43 isoform X2 [Microplitis demolitor] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_25.1_16740.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_25.1_16740.t1 atgatattttttgtagacaacaagcgtaaaggagacaatgaacttgagaatccaagtgcaaagacgaagcgacttgagca gaagaaatgcacagacctcatagtccttggactgccctggaaaagcacggaagatgacctgagaagctatttctccaagt ttggtgacctcttgttgactcaggtgaaaagagaacctaaaactggtcaaagtaaaggttatggatttgtaagatttgca aattacgactcgcagcttaaatgtctggctcagagacatatgatagatggaagatggtgtgatgtcaacatacctaactc aaatgaaatgaatagccctccttcaaacagaaaagttttcattgctcgatgctcggagaatatcaccgctgatcacctgc gggattatttcataaaatttggcgaggtcatcgacgttttcatacctaagccattcagggcctttgcttttgtcaccttc cttgacccagaggttgcccagagcctgtgtggtgaagatcacatcatccaaggcactagtgtccatgttagcagtgccgc gcctaaattcccggcaaaaggggcaggggaaagaacgggacggggcgggagtagagatagggatagggactatgggagac gggacagggatagagacagggactgggagcatagagatcgggattatgatcgcagaagtcgggattcgggatcaggatct accggtagaggggatcctaacgtagatcagaacgcattgggaatgaatttcctgaattctgccatgttagctgctgcaca ggctgtattgagtggacatgggggtagctcgtggggagggatgagcaccactacagggagtaccacagatggggggtata gtgctagtagtaggacggacagcaggacctcagggtcgtacagtggatgggggactggatatgatagtacttcgacttcc ggaagctatagtgggtggagtggtcacagtagcagagggggatggagctaa |
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Protein
| Protein ID | pfu_aug2.0_25.1_16740.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_25.1_16740.t1 MIFFVDNKRKGDNELENPSAKTKRLEQKKCTDLIVLGLPWKSTEDDLRSYFSKFGDLLLTQVKREPKTGQSKGYGFVRFA NYDSQLKCLAQRHMIDGRWCDVNIPNSNEMNSPPSNRKVFIARCSENITADHLRDYFIKFGEVIDVFIPKPFRAFAFVTF LDPEVAQSLCGEDHIIQGTSVHVSSAAPKFPAKGAGERTGRGGSRDRDRDYGRRDRDRDRDWEHRDRDYDRRSRDSGSGS TGRGDPNVDQNALGMNFLNSAMLAAAQAVLSGHGGSSWGGMSTTTGSTTDGGYSASSRTDSRTSGSYSGWGTGYDSTSTS GSYSGWSGHSSRGGWS |
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