Gene
| Gene Model ID | pfu_aug2.0_2502.1_08892 |
|---|---|
| Locus | scaffold2502.1 : 7228 ... 13165 : - |
| To GenomeBrowser | scaffold2502.1:7228..13165 |
| Genes list of scaffold | scaffold2502.1 |
| Synonym | pfu_aug1.0_52030.1_63414 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| integrase core domain protein | GO:0005488 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_2502.1_08892.t1 | 1 | 1 | zf-CCHC | 158 | 173 | 9.4e-07 | 28.4 | 6.0e-10 | 1.8e-06 | 27.6 |
| pfu_aug2.0_2502.1_08892.t1 | 1 | 1 | rve | 340 | 425 | 4.4e-13 | 49.3 | 3.0e-16 | 9.0e-13 | 48.3 |
Transcript
| Transcript ID | pfu_aug2.0_2502.1_08892.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_2502.1_08892.t1 atgccagatgacctggacagaaaatatgacttcagtccactcctcaatagggacggcaatagaagcccttcaactgggaa tatcatcaactactcaaggcagtacaacaagagcctcgactcgactccgtcaactaatgaccaacgtaaagatgtaccgg caacatatgatggcagtacatcttggctagactacaaatcacattttgaggcatgtgtagcgtatggagctcgaagccaa catgaaggcggaaataaaatcatcgagacgaagggtatgctaaagacagtggtaacagaggaaaccacacctagtccaat ggacgagttacaaaaaatagtcagtgagttatacaaatcaatgaaatatacgaaagttcagctgagccaactgaaagaca aaaatggtagacccgttaaactttttaataggaataagccgcgatcacgagactggaagaatgatgcagaatgctacaac tgtggcagaaagggtcatatcatgcgtgagtgtagggaggaaaagaacgatcgtgccaaagacaaaaaggacaaaccata tttcggacctgggaaacagtcccatatcaaaagcatagaaggatataatatagacaaaggagaagatggaatcgttatag aagctctttcacaagcagaggcagtgaaagatgttcaaactccaaatgagaacatacaccaagatatatcactccctgaa tctgttcaggatctgctctcgagatcaagcaagcaacctagcaacaaacagacaaaggaattgagaaagatattgcagca atacgtatcagtcttctcgaaaggagacaaagactttgggagaacggatctagagaagcatccaatcaacacgggctcaa aagctcccattgaacagcgcttaaggagaacacccgttcatcttgatggagttgtagaagaacatcttgatgatatgctc aaaagagacgtcatagagttgtctaccatcccaccactcagagaggcaacaagatcagactacttcacaaagtgggtaga agcatttgccatgccgaacatggaggcaatagcagtcgcagagatattgctaaagggggtagtagctagatacggggtgc cgagcactaaacactcggatcacggaaaacaatttgaagggaaagttttctcggaaatgtgttctgtactgaacatagat aagacccgtgcaacaccataccaccctcagtcggatgttatggtggagtggttcaacaagacgttgttgaccatgttgag aactttggttgatgagaatcaaagtaacgtggatgatctgctaccgtatgtcatcatggcatatagctcagtggaacaag agactacagggagtagcccaaattacctcataatgggcagggagattgcaactccactcgacatcatggacgaaatgcct gcttcaatgcctccacaatcaaagacaacaccaggcaaggagcgaaagtgtccaatgtgtccctttaatactctggatat ggagaacatgaaagaacacttagaaatatgtgggttaaagcagatggaggaaagtattatgtgctcaaaaccagacaatg tttctagggatgaacccgacacagaagatcgaggaaatgatgctgacacaagagtcatagaggcaacagtgcctgctgat cctatgatgaggaaacggacagctcctactcctgagtatagtccaaagagaaagacaaaggcaactcagtctgacttaga gaatgatgtagaagaaccagtcatcgcaagaccagtgattgaaaggcaactctggaacttcctcctacatgtagtatact gtgatagaattaacatacagtga |
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Protein
| Protein ID | pfu_aug2.0_2502.1_08892.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_2502.1_08892.t1 MPDDLDRKYDFSPLLNRDGNRSPSTGNIINYSRQYNKSLDSTPSTNDQRKDVPATYDGSTSWLDYKSHFEACVAYGARSQ HEGGNKIIETKGMLKTVVTEETTPSPMDELQKIVSELYKSMKYTKVQLSQLKDKNGRPVKLFNRNKPRSRDWKNDAECYN CGRKGHIMRECREEKNDRAKDKKDKPYFGPGKQSHIKSIEGYNIDKGEDGIVIEALSQAEAVKDVQTPNENIHQDISLPE SVQDLLSRSSKQPSNKQTKELRKILQQYVSVFSKGDKDFGRTDLEKHPINTGSKAPIEQRLRRTPVHLDGVVEEHLDDML KRDVIELSTIPPLREATRSDYFTKWVEAFAMPNMEAIAVAEILLKGVVARYGVPSTKHSDHGKQFEGKVFSEMCSVLNID KTRATPYHPQSDVMVEWFNKTLLTMLRTLVDENQSNVDDLLPYVIMAYSSVEQETTGSSPNYLIMGREIATPLDIMDEMP ASMPPQSKTTPGKERKCPMCPFNTLDMENMKEHLEICGLKQMEESIMCSKPDNVSRDEPDTEDRGNDADTRVIEATVPAD PMMRKRTAPTPEYSPKRKTKATQSDLENDVEEPVIARPVIERQLWNFLLHVVYCDRINIQ |
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