Gene
| Gene Model ID | pfu_aug2.0_2510.1_02160 |
|---|---|
| Locus | scaffold2510.1 : 65126 ... 94056 : + |
| To GenomeBrowser | scaffold2510.1:65126..94056 |
| Genes list of scaffold | scaffold2510.1 |
| Synonym | pfu_aug1.0_15538.1_25424 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| atp-dependent rna helicase dhx33 | GO:0000166 GO:0004386 GO:0005768 GO:0005783 GO:0008152 GO:0016020 GO:0044763 GO:0048522 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_2510.1_02160.t1 | 2 | 1 | DEAD | 54 | 206 | 3.8e-08 | 33.0 | 5.1e-11 | 9.5e-08 | 31.7 |
| pfu_aug2.0_2510.1_02160.t1 | 2 | 2 | DEAD | 246 | 311 | 3.8e-08 | 33.0 | 1.3 | 2400.0 | -2.2 |
| pfu_aug2.0_2510.1_02160.t1 | 1 | 1 | HA2 | 423 | 514 | 4.7e-23 | 81.1 | 4.9e-26 | 9.2e-23 | 80.2 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_2510.1_02160.t1 | gi|585722682|ref|XP_002732327.2| | PREDICTED: putative ATP-dependent RNA helicase DHX33-like [Saccoglossus kowalevskii] | 0.0 |
| pfu_aug2.0_2510.1_02160.t1 | gi|734626557|ref|XP_010741427.1| | PREDICTED: putative ATP-dependent RNA helicase DHX33 [Larimichthys crocea] | 0.0 |
| pfu_aug2.0_2510.1_02160.t1 | gi|658887013|ref|XP_008426371.1| | PREDICTED: putative ATP-dependent RNA helicase DHX33 [Poecilia reticulata] | 0.0 |
| pfu_aug2.0_2510.1_02160.t1 | gi|742207330|ref|XP_010895327.1| | PREDICTED: putative ATP-dependent RNA helicase DHX33 [Esox lucius] | 0.0 |
| pfu_aug2.0_2510.1_02160.t1 | gi|556953582|ref|XP_005988626.1| | PREDICTED: putative ATP-dependent RNA helicase DHX33 isoform X2 [Latimeria chalumnae] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_2510.1_02160.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_2510.1_02160.t1 atgaggatgcctgatgatggacctcctaaaaagaaaaccaagatgtccgaagcaggttcaagttcacatggcagaaatgg taactatgacactggagttagttatcacagattaaaggaagaacggaggaaattaccgatattccctgccaagggaaaac taattaaccagatacaaagacttgatactgccatagtaataggggaaacagggagtggaaaaacaacacagattccccag tatctgtatgagtcaggaatccacagaaatgctattgtagctgtaacacagcctaggagggtagcagccattaccgtagc ccagagagtctctgatgaaaggggtcagcaattaggacagctggtgggatattgtgtgaggtttgaggatgtgacgtcag aaaatacaaagataaaatacatgacggatggaatgctgctaagggaggcaatcctggatccacttatgaagagatattct gtagtgatcctagatgaagcccatgagcgcactatacatacagatgttctatttggggttgtgaaggcggcacaacgcca tcggaaaatgaaaggaataagaccgttaaagataattgtgatgtcggcgaccatggatgtagatcatttctctaattact tcaacaaagccccagtactgtacctagaaggtagacagtatccagtacaggtgtattacgccccagaaccacagtctgat tacgtgtttgcctctgtggtcacgctgttccagattcacaaagaggaaccgcccaatcaggatgtgttgatattccttac tggtcaggaggagatagagtctgcagtgaagacgattcgtgacgcagctagagatgcttcgggacaaatgccgcccctaa tggtctgtcccttgtatgccgctctaccgtcacaacagcaacttaaagtatttaagccgacaccttcaggcatcagattt gttacatatgctggtatggtcaaggcaaaagtatttaatcccctgagtggtttggacctgttgaaggtagttaggatatc taaggcccagggcttacagaggaccggcagggcagggagggaggctccaggggcctgctatagactctatacagaacagg aatttgaggaacttaaagctaacactgtgccagaaatacagagaaccaacctgtcgagtgtggtactacagctaatggct ctgggtatatcagatgtagttaactttgacttcatggataaaccatccactgagtccattgtaagtgcagtaagccagtt agaggatcttggagctgtgaccaatgataaaccaccaaggttaacccctcttggacgtaagatggcagctttcccattag atcccaggttaagtaaaacgatcctgctggccaaggactttcactgtctagaggagatactgagtatcgtgtcagtgctg tctgtagattccgttttgtttacacctcaaagcaagagagaggaagcccttgctgcccgggctaagtttgtgtccagtga aggtgatcatgtgatgttcctgaacatatacagagcctataaaggtgttaaaggaaataaggactggtgtcatgaaaact ttataaatggtcgtaacatgaagacggccacagaggtgcgacagcaattacgacagatctgtgagagacaagaaataccc atacagtcatgtgggaacgatacatcggctatcag |
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Protein
| Protein ID | pfu_aug2.0_2510.1_02160.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_2510.1_02160.t1 MRMPDDGPPKKKTKMSEAGSSSHGRNGNYDTGVSYHRLKEERRKLPIFPAKGKLINQIQRLDTAIVIGETGSGKTTQIPQ YLYESGIHRNAIVAVTQPRRVAAITVAQRVSDERGQQLGQLVGYCVRFEDVTSENTKIKYMTDGMLLREAILDPLMKRYS VVILDEAHERTIHTDVLFGVVKAAQRHRKMKGIRPLKIIVMSATMDVDHFSNYFNKAPVLYLEGRQYPVQVYYAPEPQSD YVFASVVTLFQIHKEEPPNQDVLIFLTGQEEIESAVKTIRDAARDASGQMPPLMVCPLYAALPSQQQLKVFKPTPSGIRF VTYAGMVKAKVFNPLSGLDLLKVVRISKAQGLQRTGRAGREAPGACYRLYTEQEFEELKANTVPEIQRTNLSSVVLQLMA LGISDVVNFDFMDKPSTESIVSAVSQLEDLGAVTNDKPPRLTPLGRKMAAFPLDPRLSKTILLAKDFHCLEEILSIVSVL SVDSVLFTPQSKREEALAARAKFVSSEGDHVMFLNIYRAYKGVKGNKDWCHENFINGRNMKTATEVRQQLRQICERQEIP IQSCGNDTSAI |
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