Gene
| Gene Model ID | pfu_aug2.0_252.1_07230 |
|---|---|
| Locus | scaffold252.1 : 108816 ... 116303 : + |
| To GenomeBrowser | scaffold252.1:108816..116303 |
| Genes list of scaffold | scaffold252.1 |
| Synonym | pfu_aug1.0_2135.1_51537 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_252.1_07230.t1 | 1 | 1 | Med25 | 60 | 214 | 0.0 | 178.6 | 0.0 | 0.0 | 177.2 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_252.1_07230.t1 | gi|676447674|ref|XP_009051485.1| | hypothetical protein LOTGIDRAFT_228259 [Lottia gigantea] | 0.0 |
| pfu_aug2.0_252.1_07230.t1 | gi|602646788|ref|XP_007429825.1| | PREDICTED: mediator of RNA polymerase II transcription subunit 25 isoform X4 [Python bivittatus] | 9.99995e-41 |
| pfu_aug2.0_252.1_07230.t1 | gi|602646782|ref|XP_007429822.1| | PREDICTED: mediator of RNA polymerase II transcription subunit 25 isoform X1 [Python bivittatus] | 2.0e-40 |
| pfu_aug2.0_252.1_07230.t1 | gi|620970445|ref|XP_001518479.3| | PREDICTED: mediator of RNA polymerase II transcription subunit 25-like, partial [Ornithorhynchus anatinus] | 2.0e-40 |
| pfu_aug2.0_252.1_07230.t1 | gi|584016781|ref|XP_006803141.1| | PREDICTED: mediator of RNA polymerase II transcription subunit 25-like [Neolamprologus brichardi] | 3.0e-40 |
Transcript
| Transcript ID | pfu_aug2.0_252.1_07230.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_252.1_07230.t1 atgatacagaactacagtaggatggcacaacaagatgagcaggatcaacagcagcaagtcatgagaatgactgaggtgga taatcaaccaggccagcctatcagctccaatccccagctggtacagaatcaacgaatgccatcggcagagtttgaaggtc agcagaatcaagcagcagaacagacgcaagacagacaaataatatggagaggtctgttagagtggcaggagaaagtgaaa ccaggtggtccccagcagcctaaggtgtccagacagttacagtgtcatctgtctataggacacagtgatcctgatattaa tgccagtaattggccctcggagttgatcatgcagtttattccccagtctttactcacttctacgcagcttcagcatcgat ttaaaaactcccgccaggtggcattccattttggcagccacaatcttgaagctttgaagaatctgtacaaagtcatggga acaggatttgcaggatgtgtacatttcccgtcaccgagtcagtgtgatgtgcgagtgttattgttactattcagtaacaa tcgtagggcattcattggtttaatacccaatgatcagacaggttttgttcaaggaatgaggactgccatatactcttata agatagagcaacaaagacagaacatgctaaaagaagctacaggtacacaaatgccagcatcaaacgtggagtttccaggg caacagccaaataatcagcttaatgacaatgtgcatgtacatgtagatataatttatggatcgacagtatgtttagttgg ggcaaaccgtttattttcaagtcaaagccatttgactggaatgacacagtatactatcatcagcttacagagggattctc ctttgtaccaaagtaccaagnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnacatgacagaagtatacgaggaattta atactttggcacatgtgacaaatttcgaaagccttcaagaaatttttgaggatggctacataaaacatcattacgtgaag gattcctccgtgtgtaatcctgacagagtgctgtactctttgaatggtgagaaagcaaaagttggactgcatccacttgc gaggtctaaggtagtatggtatggaccttacacaaaggaaagggccaaggaccaaatggaaatggtagaaaggtatggta acgtcatgtttacccttgatcagctgattggatatgaaggcattctaaggggaccgtccttcaactactatttagtagaa gttatacattataagacacagacggctaccaggatcttggtaacaagtaaagaatatccaaatctaaacaagtacgaccc ttttgtagaaggaggaccttggtactatgatagaaaaaatgacaggcactggtgtctgaccaaagctattcactttacta caaagacagaagtaaagaacactgttgaattcatgaaggatgaaccctcatctgatttccagatgaagatttggttggca aaccatgacctttcacacaagatctgtttcagtccaagaaagggtgtacagcttgcaagaaattcagatgaatcctttct gcgacttgttcttggtacagttgcatacaaattggagcaacggcattctgtcaaaacagaagacaaaatgccatcttgta tacagttcctagagctgtcagcaaatgcgtattcaagagtacgagatgtgctagggcactttaggttgagatgcattgca aatcaagatgcacataacagcgtctcagtagctggcaatcccactaaagagaatgataaggatgctgtctcagtagatga cgattccatggaagaggatgctcagaacggcagtgattgcatgcaagataatcctgatggtgctgacactctcctggaaa ccatgcttaggtcaaagtatggagagataggtgatcagttactgaagatgaagaacattttgggcgcgcagtcttcattc catcatgtttcttctgccaaagttgcctatatactgttgatattctttaggcaagagttcttcaaagtacaaatacctct ggagcagacatttgaagcaatcatgaggttcttggagccaaatggaatctctgcattcttcaatgttttggaaactatga tagatgattccatgccaagagaagggatagaacaaacttcacataacacccgctttgtgatgtgccataaagaaattaca ctgccggatattttttaa |
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Protein
| Protein ID | pfu_aug2.0_252.1_07230.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_252.1_07230.t1 MIQNYSRMAQQDEQDQQQQVMRMTEVDNQPGQPISSNPQLVQNQRMPSAEFEGQQNQAAEQTQDRQIIWRGLLEWQEKVK PGGPQQPKVSRQLQCHLSIGHSDPDINASNWPSELIMQFIPQSLLTSTQLQHRFKNSRQVAFHFGSHNLEALKNLYKVMG TGFAGCVHFPSPSQCDVRVLLLLFSNNRRAFIGLIPNDQTGFVQGMRTAIYSYKIEQQRQNMLKEATGTQMPASNVEFPG QQPNNQLNDNVHVHVDIIYGSTVCLVGANRLFSSQSHLTGMTQYTIISLQRDSPLYQSTKXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMTEVYEEFNTLAHVTNFESLQEIFEDGYIKHHYVK DSSVCNPDRVLYSLNGEKAKVGLHPLARSKVVWYGPYTKERAKDQMEMVERYGNVMFTLDQLIGYEGILRGPSFNYYLVE VIHYKTQTATRILVTSKEYPNLNKYDPFVEGGPWYYDRKNDRHWCLTKAIHFTTKTEVKNTVEFMKDEPSSDFQMKIWLA NHDLSHKICFSPRKGVQLARNSDESFLRLVLGTVAYKLEQRHSVKTEDKMPSCIQFLELSANAYSRVRDVLGHFRLRCIA NQDAHNSVSVAGNPTKENDKDAVSVDDDSMEEDAQNGSDCMQDNPDGADTLLETMLRSKYGEIGDQLLKMKNILGAQSSF HHVSSAKVAYILLIFFRQEFFKVQIPLEQTFEAIMRFLEPNGISAFFNVLETMIDDSMPREGIEQTSHNTRFVMCHKEIT LPDIF |
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