Gene
| Gene Model ID | pfu_aug2.0_253.1_10510 |
|---|---|
| Locus | scaffold253.1 : 190430 ... 193570 : + |
| To GenomeBrowser | scaffold253.1:190430..193570 |
| Genes list of scaffold | scaffold253.1 |
| Synonym | pfu_aug1.0_120997.1_28268 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_253.1_10510.t1 | 1 | 1 | RVT_1 | 32 | 161 | 1.2e-15 | 57.4 | 4.8e-19 | 2.4e-15 | 56.4 |
| pfu_aug2.0_253.1_10510.t1 | 1 | 1 | rve | 307 | 413 | 5.6e-22 | 78.1 | 2.8e-25 | 1.4e-21 | 76.8 |
Transcript
| Transcript ID | pfu_aug2.0_253.1_10510.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_253.1_10510.t1 atggttatcgtcgaaaagcctaatcgcgttcgaatttgtctagatcccagagatctcaacaaagcgataatgagagaaca tcatcctatgaaaaccgtagacgatgtcgcgcatcagctgagtggagcgaaagtcttcagcacgttggatgcgtcatccg gattttggggcattgtattggattccgaaagttcgaagctaactacattcaatacaccattcgggcgttatcgatataaa cgcatgccattcggagtatcgtccgcaccggaagtcttccagcgaaaaatgtcgcagatatttgagggtatagaaggctg tgacgtaatcatggatgacattcttgtatggggcaagacgatagatgagcacaatgatcgtttacataaagtgctagaag ccgttaaacgagcgaatataaagcttaataggattaagtgcaaattccagatgccggaagtgaaatatatgggtcacatc ataggaaaggatggcctaaaaaccgccgaggatcgtgtcaaatcgatagctgatttccccaagccgaaaaatgtcaagga actacagagattctttggcatggtaaattatgtcggaaggttcgttaaaaacctcacagcgttgaccgaaccattgaggc agttactagagaaaaatactgcgtggcactgggaagacagacaacaagaaagcttcgataagctgaaaaaagccttgaca gaagcgccagtactaagatattttaatccgaaggaggaggttacaatatccgtagatgcatcatcagaggggctaggagc ctgcttgctacaaaaagggcaacctgtggcgtatgcgtcgagagcgctaaacaaatctgaacgaaactacgcacagatcg agaaggaattattggcaatcgtttttgcgtttccgctaagaccttggcaaaaggttggaatcgatttgttcgaacttgac aaaataagctatgttgtaatagtggattattattcgaagtttttcgaaattaatgagctgaaatcaactacgagtaaagc aataattacaaagctcagaatacagtttgcgagacatggaataccggaagagctgataagtgacaacgcaccaaatctta cgagtgcagaatttaatacattttgcaaagattatggaattaaacacactacatcttctccacactatcctcagagtaac gggatggctgagagaactgtacaaactgtaaagaacattctaaaaaagtgcaaagaaacaaaatcagacccaaatctagc gtttcttgaatacagaaatactccaatagaaggaataggatcgccttctcaattactttttggacgcagaaccannnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnncacttaccgacacacggcgaactcttaaatccgaacaataaatctgctaggaacgttcgaaggtcgttaa agtctaaacaaaggaggacgaaacaacagtatgacaagaatgcgagaccgttgacagagttaaaaccaggagacgtggta aatattcaaacacaggaggaaccgtggaaaaaaggggttgtacttgataaaagatccgaacctagatcctacactgtcga atcagaaggggtcaaataccgccgaaatagacgtgatcttagacaagtaccagagttatgcgaacgggacgataatcacg ttgatgacgaaattcagcacagaaatgaaccaagttccgcgcctgataataactcttcagataacgcataccgcacgcgc agtggtcgggcagtgcacttaccagagaaatttaaagatttccagatgtacaaatga |
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Protein
| Protein ID | pfu_aug2.0_253.1_10510.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_253.1_10510.t1 MVIVEKPNRVRICLDPRDLNKAIMREHHPMKTVDDVAHQLSGAKVFSTLDASSGFWGIVLDSESSKLTTFNTPFGRYRYK RMPFGVSSAPEVFQRKMSQIFEGIEGCDVIMDDILVWGKTIDEHNDRLHKVLEAVKRANIKLNRIKCKFQMPEVKYMGHI IGKDGLKTAEDRVKSIADFPKPKNVKELQRFFGMVNYVGRFVKNLTALTEPLRQLLEKNTAWHWEDRQQESFDKLKKALT EAPVLRYFNPKEEVTISVDASSEGLGACLLQKGQPVAYASRALNKSERNYAQIEKELLAIVFAFPLRPWQKVGIDLFELD KISYVVIVDYYSKFFEINELKSTTSKAIITKLRIQFARHGIPEELISDNAPNLTSAEFNTFCKDYGIKHTTSSPHYPQSN GMAERTVQTVKNILKKCKETKSDPNLAFLEYRNTPIEGIGSPSQLLFGRRTXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHLPTHGELLNPNNKSARNVRRSLKSKQRRTKQQYDKNARPLTELKPGDVV NIQTQEEPWKKGVVLDKRSEPRSYTVESEGVKYRRNRRDLRQVPELCERDDNHVDDEIQHRNEPSSAPDNNSSDNAYRTR SGRAVHLPEKFKDFQMYK |
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