Gene
| Gene Model ID | pfu_aug2.0_253.1_10512 |
|---|---|
| Locus | scaffold253.1 : 208428 ... 217469 : - |
| To GenomeBrowser | scaffold253.1:208428..217469 |
| Genes list of scaffold | scaffold253.1 |
| Synonym | pfu_aug1.0_405171.1_57746 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| neuronal acetylcholine receptor subunit alpha-6 | GO:0006811 GO:0016020 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_253.1_10512.t1 | 2 | 1 | Neur_chan_LBD | 31 | 225 | 1.19951e-42 | 145.4 | 0.0 | 1.19951e-42 | 145.4 |
| pfu_aug2.0_253.1_10512.t1 | 1 | 1 | Neur_chan_memb | 232 | 374 | 7.8e-20 | 71.7 | 2.8e-23 | 1.0e-19 | 71.3 |
| pfu_aug2.0_253.1_10512.t1 | 2 | 2 | Neur_chan_LBD | 360 | 361 | 1.19951e-42 | 145.4 | 0.46 | 1700.0 | -2.1 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_253.1_10512.t1 | gi|543746891|ref|XP_005514219.1| | PREDICTED: neuronal acetylcholine receptor subunit alpha-6 [Columba livia] | 0.0 |
| pfu_aug2.0_253.1_10512.t1 | gi|704197793|ref|XP_010141162.1| | PREDICTED: neuronal acetylcholine receptor subunit alpha-6 [Buceros rhinoceros silvestris] | 0.0 |
| pfu_aug2.0_253.1_10512.t1 | gi|683928833|ref|XP_009094309.1| | PREDICTED: neuronal acetylcholine receptor subunit alpha-6 [Serinus canaria] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_253.1_10512.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_253.1_10512.t1 atgataggatctttacttaagtttggctgtcgtggacctccttttgaaagtggccttgaatatatttattgcgttttgac ggagatctttacgacaaatagctacaatagaaaagtgttaccacggaacggaacaaatcccatatacttggatataagtt tatattttcttggtatcaacgaaatcgacgaagtctcagagaaaatggtaacaactgcatatctttcaataacatggcag gacaccgcgttatcgtggtcgccatcctcgcatggatctattgaccttatattcgtgccacaaggtgatatatggaaacc ggatatatttcttcagaatggttttaagaaatttacagagctaggcggaccatactattatgtagaaatattcgatgacg gcagagtcatatggatgccttttgaggtttttgaaagcaggtgcgcaatggatacgagttatttcccttttgacaagcag acatgtgacataaccttcgtagtatggagtcatactgttgtacaggtagaaatacaaaaaagtcagtatggattgatcat cgatgaccagtttacagcgaacagtgtatgggatatcacgtcatactcacatgacgtcagcaaagaatcaagggaatcga aaataactttcactttcaatatgaaaagaaaacctctctattatatcgtcaatacactcataccagtcattcttcttgga tttttgagtgggctcgtgttcgttatacctgcagaaacaggggagaaaaccggatattctgtgacggtttttcttgccct ggcagtttttcttactatagtaagtgatctacttccggttaattccgaacaagtttcaatcctcggactttatctcctca ttcaagttttcatgggagtcatcgttctgattatatcaacgattcagctgcgacttcattttagagaaaactctaaatct gtaactggaatttatctaaaagtggtgccaccacagccaaaagtaagtcacaacaacatcaacaacaacagcaacaacaa tacaccaacaacagcaacagcaacacaacaacaacaacaacacaacaacaacaacacaacaacaacaacaatacaacaac aactgcaacagcaacagcaacaacaacagacgtaa |
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Protein
| Protein ID | pfu_aug2.0_253.1_10512.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_253.1_10512.t1 MIGSLLKFGCRGPPFESGLEYIYCVLTEIFTTNSYNRKVLPRNGTNPIYLDISLYFLGINEIDEVSEKMVTTAYLSITWQ DTALSWSPSSHGSIDLIFVPQGDIWKPDIFLQNGFKKFTELGGPYYYVEIFDDGRVIWMPFEVFESRCAMDTSYFPFDKQ TCDITFVVWSHTVVQVEIQKSQYGLIIDDQFTANSVWDITSYSHDVSKESRESKITFTFNMKRKPLYYIVNTLIPVILLG FLSGLVFVIPAETGEKTGYSVTVFLALAVFLTIVSDLLPVNSEQVSILGLYLLIQVFMGVIVLIISTIQLRLHFRENSKS VTGIYLKVVPPQPKVSHNNINNNSNNNTPTTATATQQQQQHNNNNTTTTTIQQQLQQQQQQQQT |
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