Gene
| Gene Model ID | pfu_aug2.0_253.1_10513 |
|---|---|
| Locus | scaffold253.1 : 222280 ... 224049 : - |
| To GenomeBrowser | scaffold253.1:222280..224049 |
| Genes list of scaffold | scaffold253.1 |
| Synonym | NA |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| acetylcholine receptor subunit delta isoform x2 | GO:0006810 GO:0016020 GO:0044699 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_253.1_10513.t1 | 1 | 1 | Neur_chan_LBD | 35 | 230 | 5.10073e-43 | 146.7 | 0.0 | 7.00649e-43 | 146.2 |
| pfu_aug2.0_253.1_10513.t1 | 2 | 1 | Neur_chan_memb | 237 | 325 | 7.6e-14 | 52.1 | 2.7e-17 | 9.9e-14 | 51.7 |
| pfu_aug2.0_253.1_10513.t1 | 2 | 2 | Neur_chan_memb | 372 | 410 | 7.6e-14 | 52.1 | 0.0029 | 11.0 | 5.8 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_253.1_10513.t1 | gi|594061329|ref|XP_006054746.1| | PREDICTED: acetylcholine receptor subunit delta isoform X2 [Bubalus bubalis] | 0.0 |
| pfu_aug2.0_253.1_10513.t1 | gi|742105481|ref|XP_010835257.1| | PREDICTED: acetylcholine receptor subunit delta [Bison bison bison] | 0.0 |
| pfu_aug2.0_253.1_10513.t1 | gi|56687505|ref|NP_776696.1| | acetylcholine receptor subunit delta precursor [Bos taurus] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_253.1_10513.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_253.1_10513.t1 atggagaaatttggcctgatcttgatatgccttctttgcatatgcattcaacctgccaaactgcaaaccaagactgatta tacaaatgttgttacggagatattcaccacaaatggttataataagaagattctgccgagaaatggaagtgagccagtgt atttagacttaagcttttatttccttggcataaacgaaatcagcgaagtgaatgaaaaaatggtcaccacaggatacctt gtcatacagtggacagactcaggtttgagctgggattcggacaaccacaacaatctttatcgtatatttgtgccacagaa tgacatatggaaaccagatatattcctccaaaatggcttcaaaaaattcgcagagctcggcggttcatattactatctgg aggtttacttcactggatctgttctgtggatgccatttgaggtgtttgaaagtaggtgctctttagatactagtcttttt ccatttgatcgtcagacttgtagtataacatttgtagtgtggagtcactccgttgcagaggtagaaattcagaaaagtaa agaaggcataatatatgacgaacaatttcaagagaacagtgtgtggcaaattttatcaatttcgcatgaagtaagtaaag aaaccagggagtcaaaaatcaccttttcgttttcactacgtcgtaaacctctctactatgtcgtaaatattatacttcct gtggtatttttgggatttttgagcggacttgtcttcgtcattcctgcagatactggagagaagactggatattctgtgac agtgtttctagcccttgctgtatttctaacgataatcagtgcattacttccggtaaattcagaaaaagtatctgttcttg gaatttaccttcttctacaggtgatcttgggcgttgtagtactattagtttccactattcaactgagacttaatttcaga agtgcatcaacccccgtcacaggcttatatttgaaattgaccaaactgaaggacagaatctgttgttgctgttgtagaaa gacatcaaagtcaaaccgaatcaaagacgcaaatgctcttccagatgctctaacggaaaaacatactccaccggaacagg aaacaaacggtgacagtactattacctgggctgatgtagtatctaccattgatttttggggatttgtagcttttttcacc atttactctttactcaccgtgatcatgtttattgtacttagtactgcagcaggttga |
|
Protein
| Protein ID | pfu_aug2.0_253.1_10513.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_253.1_10513.t1 MEKFGLILICLLCICIQPAKLQTKTDYTNVVTEIFTTNGYNKKILPRNGSEPVYLDLSFYFLGINEISEVNEKMVTTGYL VIQWTDSGLSWDSDNHNNLYRIFVPQNDIWKPDIFLQNGFKKFAELGGSYYYLEVYFTGSVLWMPFEVFESRCSLDTSLF PFDRQTCSITFVVWSHSVAEVEIQKSKEGIIYDEQFQENSVWQILSISHEVSKETRESKITFSFSLRRKPLYYVVNIILP VVFLGFLSGLVFVIPADTGEKTGYSVTVFLALAVFLTIISALLPVNSEKVSVLGIYLLLQVILGVVVLLVSTIQLRLNFR SASTPVTGLYLKLTKLKDRICCCCCRKTSKSNRIKDANALPDALTEKHTPPEQETNGDSTITWADVVSTIDFWGFVAFFT IYSLLTVIMFIVLSTAAG |
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