Gene
| Gene Model ID | pfu_aug2.0_254.1_13872 |
|---|---|
| Locus | scaffold254.1 : 29116 ... 36415 : + |
| To GenomeBrowser | scaffold254.1:29116..36415 |
| Genes list of scaffold | scaffold254.1 |
| Synonym | pfu_aug1.0_3450.1_51987 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| stimulator of interferon genes isoform x3 | GO:0002682 GO:0005783 GO:0019899 GO:0030551 GO:0031347 GO:0032561 GO:0032606 GO:0043168 GO:0044425 GO:0044446 GO:0045087 GO:0048522 GO:0051607 GO:0071310 GO:0098588 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_254.1_13872.t1 | 1 | 1 | TIR | 16 | 123 | 4.1e-19 | 68.4 | 2.8e-22 | 8.4e-19 | 67.4 |
| pfu_aug2.0_254.1_13872.t1 | 1 | 1 | TIR_2 | 17 | 125 | 3.1e-19 | 69.0 | 2.0e-22 | 5.8e-19 | 68.1 |
| pfu_aug2.0_254.1_13872.t1 | 1 | 1 | TMEM173 | 124 | 359 | 0.0 | 166.0 | 0.0 | 0.0 | 165.4 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_254.1_13872.t1 | gi|575771895|ref|NP_001276521.1| | stimulator of interferon genes protein isoform 3 [Mus musculus] | 1.0e-27 |
| pfu_aug2.0_254.1_13872.t1 | gi|74153059|dbj|BAE34517.1| | unnamed protein product [Mus musculus] | 2.0e-27 |
Transcript
| Transcript ID | pfu_aug2.0_254.1_13872.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_254.1_13872.t1 atgaacgggacagtacccaaattgacatacccctacatattccacgcttttatcacacattgtcctgaggatcttctttt tgcaaagcacttggtcgcagagctggagaaaattcgttttaaatgcataatagcagagagagactttcttgttggtgcac caattatcgacaacatagcagatgctattaacaattcgagaagagtagtaatgattatatcagaagcttctctaaaaagt gaatggtgtagatatgagatgctggccacactgagtgatagccatgagagaaacaaagtaacgctaatacccgtcatcat ggctgacgttgacgaccagcagcttcctcagccaatccgctttctcacttacatccatctgggtagagaaaaagaatatt ttcctaagcttgtggattgtttgagagcatttttgtgtttttctcttttctatatattttatgacattaatttcaaacat aaagcggactgtgaaagttgggaatctctgcttccggctggcaatgttgcacacggcctggcgtggagttattacttcgg atacctaaaagtcctgttaccaggtatagacaacagaatcgaacgttcagaatggtgggggagtagacaagacagtcgaa tgatgagcagaaagttatatctcctgttccctgtaagctgtatgtgcaaggacacactctgcgatgacgatgactccata acccatgctggacatctagagacgatcgttagaaacagagctggaacagtgggaaggtcctaccaaagtactgtctataa gattactgatcatgatatgaaagaatggtttttcgtgggagagtacgtgacagctattcatacaatgtacgaaatggaga tgaattctcatttctccggcctccagacagatgacaagtacctgcaagcaacacgcttccttatcactatcagaaatatt ctagaaaaagatcctcattgtcgtggaagatataagtttttaccatacacagacgttcaatctgatggaacaaagttgaa gatttctcagttacttctacagtccattcagaaagagataaaacgagaacttaaagaggaatatcctaatgatcattctg atttccatgacgaagcgtcaaccatgtcaattgcattgaaaaaggccgattcaagggagttttcgagaagcttacttaaa ctttttgatttgaattctttatccagcacaactttagaaatgcaaaaggatgaacctgtgattgaaaaagacagacgagg aaaaaccaaaagtcttgttcgagggaataatgtgaccaatttcttcgctgaagactctcctaaaataacatga |
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Protein
| Protein ID | pfu_aug2.0_254.1_13872.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_254.1_13872.t1 MNGTVPKLTYPYIFHAFITHCPEDLLFAKHLVAELEKIRFKCIIAERDFLVGAPIIDNIADAINNSRRVVMIISEASLKS EWCRYEMLATLSDSHERNKVTLIPVIMADVDDQQLPQPIRFLTYIHLGREKEYFPKLVDCLRAFLCFSLFYIFYDINFKH KADCESWESLLPAGNVAHGLAWSYYFGYLKVLLPGIDNRIERSEWWGSRQDSRMMSRKLYLLFPVSCMCKDTLCDDDDSI THAGHLETIVRNRAGTVGRSYQSTVYKITDHDMKEWFFVGEYVTAIHTMYEMEMNSHFSGLQTDDKYLQATRFLITIRNI LEKDPHCRGRYKFLPYTDVQSDGTKLKISQLLLQSIQKEIKRELKEEYPNDHSDFHDEASTMSIALKKADSREFSRSLLK LFDLNSLSSTTLEMQKDEPVIEKDRRGKTKSLVRGNNVTNFFAEDSPKIT |
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