Gene
| Gene Model ID | pfu_aug2.0_254.1_13884 |
|---|---|
| Locus | scaffold254.1 : 239090 ... 263512 : + |
| To GenomeBrowser | scaffold254.1:239090..263512 |
| Genes list of scaffold | scaffold254.1 |
| Synonym | pfu_aug1.0_21829.1_11418 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| fumarate mitochondrial | GO:0004333 GO:0006099 GO:0006106 GO:0045239 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_254.1_13884.t1 | 1 | 1 | Lyase_1 | 117 | 191 | 7.3e-07 | 28.6 | 2.7e-10 | 1.3e-06 | 27.8 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_254.1_13884.t1 | gi|156390228|ref|XP_001635173.1| | predicted protein [Nematostella vectensis] | 0.0 |
| pfu_aug2.0_254.1_13884.t1 | gi|260825989|ref|XP_002607948.1| | hypothetical protein BRAFLDRAFT_74897 [Branchiostoma floridae] | 9.0e-26 |
| pfu_aug2.0_254.1_13884.t1 | gi|390345421|ref|XP_001196596.2| | PREDICTED: probable fumarate hydratase, mitochondrial [Strongylocentrotus purpuratus] | 2.0e-25 |
| pfu_aug2.0_254.1_13884.t1 | gi|585710691|ref|XP_006824593.1| | PREDICTED: fumarate hydratase, mitochondrial-like, partial [Saccoglossus kowalevskii] | 2.0e-24 |
| pfu_aug2.0_254.1_13884.t1 | gi|625192295|ref|XP_007638787.1| | PREDICTED: fumarate hydratase, mitochondrial isoform X2 [Cricetulus griseus] | 1.0e-22 |
Transcript
| Transcript ID | pfu_aug2.0_254.1_13884.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_254.1_13884.t1 atgaaacatcgttatgcatttatgcgaggattgataagccatgagaggtttcagaggtccagacactacctgaaatctgc tgcagagtgtacttctcgtgccatagtttctttagagctatctgaatcagcagtgaaatctccaaggcaggcagaaaaac ttgaaggtattggtggagaaacagcgtctaggctgaagaaatacgctgatgaaaagaaatttagcaatagtaaaccaatg ggtggtatctatacaagtgctgcaggggctattcttgtagctttactagagtgcgaggaacgccaaatagcaaatggcca cagcccagagagaagcatcttagtgccggagaactttgacatcggtggccctacagagagaatgcctctaccagtgctgg tttccatggcgatactgaagcgctgtgctgcagaagtgaataaaacctttggtcttgattgggagattgcacagaacatc ataaaagccgcagacgaagtaatagacggaaaactctgggaccactttccccttgtggtgtggcaaacaggtttttgtca agcttggtggagaatagaggttctgataaaacgtgactacatcaagagacgctctcatcataaatcacctgtatacacac ttctacctctcgggagagagactgcacacagactcaggggtgatgatgatatcacatcaagtgttatgccagtaccaagt gttaatccactaagatcaagtgtaacgccaagatcatcatccactcctaccaccaccacagcagatgccttatacacaaa cgattctggaaaagatggtatcataatgctaattgactgctcggaaatgggaggcgacagagttgccttaggccaggtta agtacatttggacaggtccatttctagccaattatgacttgtcaagaagtttaaaagaaggaaggttcttgccacaaata cagaagatggtcgtgtggaaaaacacatttacagacaagggaacagattctatgttgtattacttactagagggacatcc agaagactatgtggtgaagtgtgcggatggatgccaaggtgtgggcatgtgtggataccctaaccttacccaaatcaaga gggccattcttgacttggaaggtcatagtgatcttactctactgaaaacagaaaacttagaagaaagtgttgtgatgttg gcctccatcacagctgatctacagctgaggtgtacacaagcggatttttcttccttaacaagccagtcgaaagctgcaaa gaacaaagaagataacactgttattattctagatagcagtgatagtgaggacatggatcagacaatttcagtgacagatt catcgcagtcttattcaggaactcttacgtgtacaatgtcctcttcgtggtcaggcatatccttaaaaggaacaaatgac aattcttattgtaaaagagatcagaatggtaaccatggtagcagagcctag |
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Protein
| Protein ID | pfu_aug2.0_254.1_13884.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_254.1_13884.t1 MKHRYAFMRGLISHERFQRSRHYLKSAAECTSRAIVSLELSESAVKSPRQAEKLEGIGGETASRLKKYADEKKFSNSKPM GGIYTSAAGAILVALLECEERQIANGHSPERSILVPENFDIGGPTERMPLPVLVSMAILKRCAAEVNKTFGLDWEIAQNI IKAADEVIDGKLWDHFPLVVWQTGFCQAWWRIEVLIKRDYIKRRSHHKSPVYTLLPLGRETAHRLRGDDDITSSVMPVPS VNPLRSSVTPRSSSTPTTTTADALYTNDSGKDGIIMLIDCSEMGGDRVALGQVKYIWTGPFLANYDLSRSLKEGRFLPQI QKMVVWKNTFTDKGTDSMLYYLLEGHPEDYVVKCADGCQGVGMCGYPNLTQIKRAILDLEGHSDLTLLKTENLEESVVML ASITADLQLRCTQADFSSLTSQSKAAKNKEDNTVIILDSSDSEDMDQTISVTDSSQSYSGTLTCTMSSSWSGISLKGTND NSYCKRDQNGNHGSRA |
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