Gene
| Gene Model ID | pfu_aug2.0_255.1_17191 |
|---|---|
| Locus | scaffold255.1 : 214393 ... 223778 : - |
| To GenomeBrowser | scaffold255.1:214393..223778 |
| Genes list of scaffold | scaffold255.1 |
| Synonym | NA |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| rna polymerase-associated protein partial | GO:0001711 GO:0005730 GO:0006378 GO:0010390 GO:0016055 GO:0016593 GO:0019827 GO:0031442 GO:0032968 GO:0033523 GO:0045638 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_255.1_17191.t1 | 2 | 1 | Leo1 | 4 | 76 | 4.8e-12 | 45.9 | 4.8e-16 | 7.1e-12 | 45.3 |
| pfu_aug2.0_255.1_17191.t1 | 2 | 2 | Leo1 | 76 | 99 | 4.8e-12 | 45.9 | 0.037 | 550.0 | 0.1 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_255.1_17191.t1 | gi|676472421|ref|XP_009059484.1| | hypothetical protein LOTGIDRAFT_77324, partial [Lottia gigantea] | 0.0 |
| pfu_aug2.0_255.1_17191.t1 | gi|700355619|ref|XP_009922137.1| | PREDICTED: RNA polymerase-associated protein LEO1, partial [Haliaeetus albicilla] | 0.0 |
| pfu_aug2.0_255.1_17191.t1 | gi|345329262|ref|XP_001512640.2| | PREDICTED: RNA polymerase-associated protein LEO1, partial [Ornithorhynchus anatinus] | 0.0 |
| pfu_aug2.0_255.1_17191.t1 | gi|593770935|ref|XP_007123839.1| | PREDICTED: RNA polymerase-associated protein LEO1-like [Physeter catodon] | 0.0 |
| pfu_aug2.0_255.1_17191.t1 | gi|507557584|ref|XP_004662534.1| | PREDICTED: RNA polymerase-associated protein LEO1 isoform X1 [Jaculus jaculus] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_255.1_17191.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_255.1_17191.t1 atgccgatccacggagattttaaccatctgtttgtacgtcagggaacgggtcttcaaggtcaaactgtatttaaaaccaa gttggctttcagacctcattctacagaatccttcacacacagaaagatgaccttgtcattagctgacaggtcaactaaag ctcaaaaggtcaaggtcttaccaatgtcaggtcgtgacccagatgctcacagaactgaaatgatcaagaaagaggaggaa aaattacgagcagccatcaaacgtgagagcactaaaagaagaatgaaggagagatccatgcaccgttctatgaatgctgg gtatttagagggtgatgattacgacgatgatgaaggagtgtctatcaaggctctcaaaaaccattacaaacagaaaaaag ctggaaaatcacagaatgaacaccaaaatctgacagtctga |
|
Protein
| Protein ID | pfu_aug2.0_255.1_17191.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_255.1_17191.t1 MPIHGDFNHLFVRQGTGLQGQTVFKTKLAFRPHSTESFTHRKMTLSLADRSTKAQKVKVLPMSGRDPDAHRTEMIKKEEE KLRAAIKRESTKRRMKERSMHRSMNAGYLEGDDYDDDEGVSIKALKNHYKQKKAGKSQNEHQNLTV |
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