Gene
| Gene Model ID | pfu_aug2.0_2553.1_12202 |
|---|---|
| Locus | scaffold2553.1 : 19296 ... 21724 : + |
| To GenomeBrowser | scaffold2553.1:19296..21724 |
| Genes list of scaffold | scaffold2553.1 |
| Synonym | pfu_aug1.0_24074.1_69608 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_2553.1_12202.t1 | 4 | 1 | SMAP | 38 | 67 | 2.8e-15 | 56.3 | 0.029 | 430.0 | 1.2 |
| pfu_aug2.0_2553.1_12202.t1 | 4 | 2 | SMAP | 107 | 107 | 2.8e-15 | 56.3 | 0.4 | 6000.0 | -2.4 |
| pfu_aug2.0_2553.1_12202.t1 | 4 | 3 | SMAP | 235 | 235 | 2.8e-15 | 56.3 | 1.0 | 15000.0 | -14.9 |
| pfu_aug2.0_2553.1_12202.t1 | 4 | 4 | SMAP | 293 | 379 | 2.8e-15 | 56.3 | 1.9e-19 | 2.8e-15 | 56.3 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_2553.1_12202.t1 | gi|701297609|ref|XP_010009098.1| | PREDICTED: lysine-rich nucleolar protein 1 [Nestor notabilis] | 2.0e-18 |
| pfu_aug2.0_2553.1_12202.t1 | gi|527250322|ref|XP_005143474.1| | PREDICTED: lysine-rich nucleolar protein 1 [Melopsittacus undulatus] | 3.0e-18 |
| pfu_aug2.0_2553.1_12202.t1 | gi|675411573|ref|XP_008918765.1| | PREDICTED: lysine-rich nucleolar protein 1 [Manacus vitellinus] | 8.0e-18 |
| pfu_aug2.0_2553.1_12202.t1 | gi|700436772|ref|XP_009957457.1| | PREDICTED: lysine-rich nucleolar protein 1 [Leptosomus discolor] | 1.0e-17 |
| pfu_aug2.0_2553.1_12202.t1 | gi|594101811|ref|XP_006073985.1| | PREDICTED: lysine-rich nucleolar protein 1 isoform X1 [Bubalus bubalis] | 2.0e-17 |
Transcript
| Transcript ID | pfu_aug2.0_2553.1_12202.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_2553.1_12202.t1 atgggaccagtgacagaggataatgaaaagaagacttcaagaaaagagaaaaagaagaagaaacggaagtgtgaagaatt tccaaaacctgaagccacatcatcacattctgacagtacctcagagtcacattcatgcagaaagaaaagaaagaaggaaa aacattcaagggaagatttagaagaagactacaatcaatctccacctaagaagaagaataaactttcagatagtagcagt gtcgtgaaaaacaaaactacagagaaagaatatgtgacacacgattcagattctgaagatcttcattctactgaaagaaa aaagaggaagaagaagaaggaagataagggtgacatagtctcttcagaaaaagacagaaggaaagatagtggtaatgatg ttgttcataatagagcagtggaggacactgacataccggtagatcatgacacaaagaaaaagaagaaaatgaagaagggt aaccaagagaaggagaatggagacttttcaacgacaagttttgaagatacaaaaccagtagaacaaagagaaataaataa agatgcaaatacttctcatagtgaatgtacatcaaagaagaagaaaaagaagaaaagacaaaggagtaagggtgagaaag agagaagcgaagaaccttgtgacagatcaatgatggaagctcaacacctagatatcttgctcaccaatgatgacaataag tctaagaagaagaaaaagaaatcaaagaaggaaaaagactctgaaattatgaatgagaatgtaaaaggtggggatgataa tttgacagtaaataagcaggggagtagggaggcacaaacagcagatatgatgggaaaggatgcacctaaagtaggccagt ggggtactgcagcatttgccaatgataaacaacaagaaaaattcctaagacttttgggaggcttcaaagcaggctctaaa ttaggtggaaaaacaaatatgttagaaaaatttaccagagctagtgaaagtacctccgacaaaaatacagtaaactgtgc catgaataaaagagaagaagaaaagtataaaaggaacatggaaaatcaatatgagaaggcaatgtccatgaatttaaata gaggcatcggtctcggctttgatacaacaagtatcgggaaaaaattccacattgataaatttcgttcaaagtctatgaaa tttgatgattga |
|
Protein
| Protein ID | pfu_aug2.0_2553.1_12202.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_2553.1_12202.t1 MGPVTEDNEKKTSRKEKKKKKRKCEEFPKPEATSSHSDSTSESHSCRKKRKKEKHSREDLEEDYNQSPPKKKNKLSDSSS VVKNKTTEKEYVTHDSDSEDLHSTERKKRKKKKEDKGDIVSSEKDRRKDSGNDVVHNRAVEDTDIPVDHDTKKKKKMKKG NQEKENGDFSTTSFEDTKPVEQREINKDANTSHSECTSKKKKKKKRQRSKGEKERSEEPCDRSMMEAQHLDILLTNDDNK SKKKKKKSKKEKDSEIMNENVKGGDDNLTVNKQGSREAQTADMMGKDAPKVGQWGTAAFANDKQQEKFLRLLGGFKAGSK LGGKTNMLEKFTRASESTSDKNTVNCAMNKREEEKYKRNMENQYEKAMSMNLNRGIGLGFDTTSIGKKFHIDKFRSKSMK FDD |
|