Gene
| Gene Model ID | pfu_aug2.0_2561.1_05578 |
|---|---|
| Locus | scaffold2561.1 : 26476 ... 28804 : + |
| To GenomeBrowser | scaffold2561.1:26476..28804 |
| Genes list of scaffold | scaffold2561.1 |
| Synonym | pfu_aug1.0_95836.1_35156 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_2561.1_05578.t1 | 1 | 1 | Coiled-coil_56 | 28 | 100 | 1.1e-08 | 34.9 | 9.3e-13 | 1.4e-08 | 34.6 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_2561.1_05578.t1 | gi|308477728|ref|XP_003101077.1| | hypothetical protein CRE_17325 [Caenorhabditis remanei] | 3.0e-06 |
| pfu_aug2.0_2561.1_05578.t1 | gi|25149177|ref|NP_494810.2| | F35D11.5 [Caenorhabditis elegans] | 3.0e-06 |
| pfu_aug2.0_2561.1_05578.t1 | gi|268529880|ref|XP_002630066.1| | Hypothetical protein CBG13442 [Caenorhabditis briggsae] | 1.0e-05 |
| pfu_aug2.0_2561.1_05578.t1 | gi|759064944|ref|XP_011341889.1| | PREDICTED: cytochrome c oxidase assembly factor 3, mitochondrial [Cerapachys biroi] | 1.0e-05 |
Transcript
| Transcript ID | pfu_aug2.0_2561.1_05578.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_2561.1_05578.t1 atgacttcaaaagttgtaaatacagtgaaaaatggtaaagaagtgatatcaaaactgaatgacttgaatttaccagacat aaatataaaaaaagaattaaaatcgctgcaccctcaccaacaatatctcgtgaaaaaatatgaaaggttgaacaaggaca gattctcacatttccacagaaatcatattgtgtatggaagaacaagaggaattgctctcgggctttgggcagtatcgatt tatctttacacagtatataccatgaaacaagaacatttcttggatgaaatccctgacgacttaccaccactggagacgga cgaaacccctgttcaaagtgaaccaacttctactccgcaggcgtcacagaaaacatga |
|
Protein
| Protein ID | pfu_aug2.0_2561.1_05578.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_2561.1_05578.t1 MTSKVVNTVKNGKEVISKLNDLNLPDINIKKELKSLHPHQQYLVKKYERLNKDRFSHFHRNHIVYGRTRGIALGLWAVSI YLYTVYTMKQEHFLDEIPDDLPPLETDETPVQSEPTSTPQASQKT |
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