Gene
| Gene Model ID | pfu_aug2.0_257.1_23755 |
|---|---|
| Locus | scaffold257.1 : 221748 ... 238690 : + |
| To GenomeBrowser | scaffold257.1:221748..238690 |
| Genes list of scaffold | scaffold257.1 |
| Synonym | pfu_aug1.0_43382.1_55898 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_257.1_23755.t1 | 4 | 1 | WD40 | 171 | 183 | 2.2e-08 | 33.6 | 0.073 | 1100.0 | -0.3 |
| pfu_aug2.0_257.1_23755.t1 | 4 | 2 | WD40 | 301 | 331 | 2.2e-08 | 33.6 | 3.1e-08 | 0.00047 | 19.9 |
| pfu_aug2.0_257.1_23755.t1 | 4 | 3 | WD40 | 347 | 378 | 2.2e-08 | 33.6 | 1.5e-06 | 0.022 | 14.6 |
| pfu_aug2.0_257.1_23755.t1 | 4 | 4 | WD40 | 451 | 469 | 2.2e-08 | 33.6 | 0.54 | 8000.0 | -3.0 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_257.1_23755.t1 | gi|676448221|ref|XP_009051663.1| | hypothetical protein LOTGIDRAFT_228373 [Lottia gigantea] | 0.0 |
| pfu_aug2.0_257.1_23755.t1 | gi|512827307|ref|XP_004912639.1| | 0.0 | |
| pfu_aug2.0_257.1_23755.t1 | gi|301606793|ref|XP_002932998.1| | PREDICTED: WD repeat-containing protein 76 [Xenopus (Silurana) tropicalis] | 0.0 |
| pfu_aug2.0_257.1_23755.t1 | gi|147900393|ref|NP_001090070.1| | WD repeat-containing protein 76 [Xenopus laevis] | 0.0 |
| pfu_aug2.0_257.1_23755.t1 | gi|697516034|ref|XP_009684684.1| | PREDICTED: WD repeat-containing protein 76 [Struthio camelus australis] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_257.1_23755.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_257.1_23755.t1 atgccctcactaagaacgagaaaaagacaacgatcgccgtctggagaggataaatcgaacaagaatgtgaaagttgagag ttctgaaattgatactgtaacagttgtggagatcaagaaagagtcgacagagagtgactctgattctgatgaggaaattc gtacatatgaggaaaagcggctgcagaacatcaaggaaaatgcagaatttcttgctcagcttggaattggtcaggctaaa aatgagtatctgaaatctattggaaagacaaaggcaaaagaaagtaatgtgaagcgccaatggaaaaagccgtccccgcc cgagccagtggtaagntgtcgctgtacacgtacctgtagaggaacatgagtgagtctgaggttacagaggataacacctg agggtttacccctccctcctgaacctgttgctgtacacgtacctgtagaggaacatccccgtaatccccctggaccacta caaatgacagagtatatggtaaagagcttcactgtggaagaacacaacaaatttgtcaacagtttacgaggagaagagaa aaagcagctcatagaaccctccacccaacctctatctgatgtggtaaaagactttaagaagttaacgataggagagaaag gtgttatgaaggtggtagctgaccggacattctccttagacatctatcctggctctgatagagtattggctgctgctggt gacaaatggggtaaacttggattttgggatgtgatatactcactcactgaggacagcagcttgttaaagagttttgattt tctgtctgctcattcgctactggtgtcacagcaggacggtgatgtagcactcgtagataccagggctaaaggagctgaag ctgaacatttatactggctacacgacaaatcattacgtacattgtccatccatcctgtggataaaaacatctttgtcacg gcctctactgacaatactgcaaaactatgggatcttcgtgcactgcgatcacagaggaagaagaatcactgcctagattt tatatcacatacaaagtcagtcgattcagcatatttttcaccagtcactggcaaatacctccttacctcttccattgaca atcgaattcagatcactgactgttcttcaaccacgaatctcaaagttgtgaaatcaatacaccatgacaatcatactgga cgttggctgacaaacttccgtcccacgtggcatccaaccagagaggacttatttgttgttggcagtatggcacgtccccg acagattgagctgtatggtatagacggatctcggctagtgacactgactaatcctgaattcctcggctctgtgtgttctc tgaacgttattcacccaacacgaaatgttgtggtgggtggaaactcaagtggaaaacttcatgtgttcatgtaa |
|
Protein
| Protein ID | pfu_aug2.0_257.1_23755.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_257.1_23755.t1 MPSLRTRKRQRSPSGEDKSNKNVKVESSEIDTVTVVEIKKESTESDSDSDEEIRTYEEKRLQNIKENAEFLAQLGIGQAK NEYLKSIGKTKAKESNVKRQWKKPSPPEPVVXCRCTRTCRGTXVSLRLQRITPEGLPLPPEPVAVHVPVEEHPRNPPGPL QMTEYMVKSFTVEEHNKFVNSLRGEEKKQLIEPSTQPLSDVVKDFKKLTIGEKGVMKVVADRTFSLDIYPGSDRVLAAAG DKWGKLGFWDVIYSLTEDSSLLKSFDFLSAHSLLVSQQDGDVALVDTRAKGAEAEHLYWLHDKSLRTLSIHPVDKNIFVT ASTDNTAKLWDLRALRSQRKKNHCLDFISHTKSVDSAYFSPVTGKYLLTSSIDNRIQITDCSSTTNLKVVKSIHHDNHTG RWLTNFRPTWHPTREDLFVVGSMARPRQIELYGIDGSRLVTLTNPEFLGSVCSLNVIHPTRNVVVGGNSSGKLHVFM |
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