Gene
| Gene Model ID | pfu_aug2.0_257.1_23764 |
|---|---|
| Locus | scaffold257.1 : 336428 ... 341734 : + |
| To GenomeBrowser | scaffold257.1:336428..341734 |
| Genes list of scaffold | scaffold257.1 |
| Synonym | pfu_aug1.0_10348.1_53528 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_257.1_23764.t1 | 2 | 1 | PLAT | 2 | 105 | 4.4e-22 | 78.5 | 1.4e-14 | 2.0e-10 | 41.0 |
| pfu_aug2.0_257.1_23764.t1 | 2 | 2 | PLAT | 136 | 181 | 4.4e-22 | 78.5 | 4.3e-13 | 6.4e-09 | 36.1 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_257.1_23764.t1 | gi|390356751|ref|XP_001190227.2| | 4.0e-38 | |
| pfu_aug2.0_257.1_23764.t1 | gi|701412626|ref|XP_009971592.1| | PREDICTED: lipoxygenase homology domain-containing protein 1-like, partial [Tyto alba] | 8.0e-25 |
Transcript
| Transcript ID | pfu_aug2.0_257.1_23764.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_257.1_23764.t1 atgacagatgataagagtaaggcagggaccatacataacggctggataatactgaagggaaagaaaggaactggtaaact caagatgaaaaatactcctagataccccatactcaggaggggtgacacaaataacttcaacttgacatgtcaacacctgg gtaaactacagcaagttacaataggagtgtgtgagagagaggatcaaccattacaggatctggagggtaaagaagccatg tggtactgtctacaggtgtctgtaacagatacaagtacaggcgataaatttatatttccgtgtaagtcttggattcctat tggtacagcctctttcaagcagaaagaaggaaaggtccttgaacttaaagatgtagaacaaagcatggtgtcctctgtga gaagagaaataaccaaggtcagaatagagcatgacaatgctaacttccggcctggttggtttttggacaaaattgaggtg accaatctggcaactagtcataaaacaacattcccatgtggtcagtggctggacaaaaacaaggaggatggtgccatttc tagagacttgatgcccatggactga |
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Protein
| Protein ID | pfu_aug2.0_257.1_23764.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_257.1_23764.t1 MTDDKSKAGTIHNGWIILKGKKGTGKLKMKNTPRYPILRRGDTNNFNLTCQHLGKLQQVTIGVCEREDQPLQDLEGKEAM WYCLQVSVTDTSTGDKFIFPCKSWIPIGTASFKQKEGKVLELKDVEQSMVSSVRREITKVRIEHDNANFRPGWFLDKIEV TNLATSHKTTFPCGQWLDKNKEDGAISRDLMPMD |
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