Gene
| Gene Model ID | pfu_aug2.0_2570.1_02178 |
|---|---|
| Locus | scaffold2570.1 : 1 ... 13419 : + |
| To GenomeBrowser | scaffold2570.1:1..13419 |
| Genes list of scaffold | scaffold2570.1 |
| Synonym | pfu_aug1.0_8875.1_17382 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| protein tyrosine phosphatase domain-containing protein 1 isoform x6 | GO:0005654 GO:0006470 GO:0007224 GO:0008138 GO:0016312 GO:0034593 GO:0034595 GO:0046030 GO:0052743 GO:0052827 GO:0060271 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_2570.1_02178.t1 | 3 | 1 | DSPc | 23 | 156 | 1.5e-15 | 56.9 | 2.7e-18 | 6.8e-15 | 54.8 |
| pfu_aug2.0_2570.1_02178.t1 | 1 | 1 | Y_phosphatase | 70 | 151 | 1.1e-09 | 38.0 | 8.9e-13 | 2.2e-09 | 37.0 |
| pfu_aug2.0_2570.1_02178.t1 | 3 | 2 | DSPc | 170 | 189 | 1.5e-15 | 56.9 | 1.9 | 4800.0 | -3.0 |
| pfu_aug2.0_2570.1_02178.t1 | 3 | 3 | DSPc | 231 | 251 | 1.5e-15 | 56.9 | 1.5 | 3700.0 | -2.6 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_2570.1_02178.t1 | gi|676449942|ref|XP_009052217.1| | hypothetical protein LOTGIDRAFT_174628 [Lottia gigantea] | 0.0 |
| pfu_aug2.0_2570.1_02178.t1 | gi|390342082|ref|XP_003725586.1| | PREDICTED: protein tyrosine phosphatase domain-containing protein 1 [Strongylocentrotus purpuratus] | 0.0 |
| pfu_aug2.0_2570.1_02178.t1 | gi|617629397|ref|XP_007529259.1| | PREDICTED: protein tyrosine phosphatase domain-containing protein 1 [Erinaceus europaeus] | 0.0 |
| pfu_aug2.0_2570.1_02178.t1 | gi|675637097|ref|XP_008991621.1| | PREDICTED: protein tyrosine phosphatase domain-containing protein 1 isoform X3 [Callithrix jacchus] | 0.0 |
| pfu_aug2.0_2570.1_02178.t1 | gi|296189454|ref|XP_002742784.1| | PREDICTED: protein tyrosine phosphatase domain-containing protein 1 isoform X2 [Callithrix jacchus] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_2570.1_02178.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_2570.1_02178.t1 ggtcacagaaaacattcttgccatggctcgtccttccaatgctgggatggacaagtacaagattattgatcagttcaaaa aacatggaattagaacagttgtgaacctccaatctgccggtgaacacgcagactgtggatttggcaatcataaaagtggt ttctcttacgaccctcagagatttatggacaatgatattttcttttacaattttggatggccagattatggagttgctgc ccttagtacaatattagacatggtaaaggtgatacagtttgctctgtcagaaggaaagatagctgtacactgccatgctg gtctcggaagaactggtgtaataatagcgtgttacttggtgtttaccaacagaatgtcaggatcagatgccatacactat gtcaggtcacaaagaaaaggtgccatccaaactcggggacagatgcagtgtgtacaagagtttgaacaatacttgaaacc attccgcattgtttttgcttcaaaagctgaaaatagtcatgaatttactctacagcaatatttgaacagacaaaaacatg tattacatgggtatgaattacggaagctaaaatatataccaaaggtgctttacattgtatgtgaaaaactgttgcaactt gctgggaaaggaactgctttagtaaaaatgcattctaagatgcgaacaatgaatatacagtcagaagttgacttgttaaa aaagtcgaacaattcaagtggcattcctagaaatttttcacatgattctctaaattccgatacagtgccgcataaaaagt taaccaagaccaaaagtgtaagtatggaggatttagataatgagaaactgaaaacagttttagacggtcatgaatcggac agtagctcttccagtaaaccttctttaacgttacgacaagagagtggggacgtagatagtttgtgtagtggaaacgatgt ggcatcgtgcagtgtacaagacattatatcagcattaacggcatctgacgtaagccaagagcagctcgataaagctgata tgtatgaggttaatttgaatgtaaaagaggagggctggaatgagtttgctatggagaatgaccctgtggtggtgtcacag gtagcttgggactggctggaccagttaaaggagcccatattgagaagacaagatatgaataagatgttggatcatgtgga ggaccctgagactggactacaaaaactagaaaagatgattcgttttttacgtcaatga |
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Protein
| Protein ID | pfu_aug2.0_2570.1_02178.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_2570.1_02178.t1 VTENILAMARPSNAGMDKYKIIDQFKKHGIRTVVNLQSAGEHADCGFGNHKSGFSYDPQRFMDNDIFFYNFGWPDYGVAA LSTILDMVKVIQFALSEGKIAVHCHAGLGRTGVIIACYLVFTNRMSGSDAIHYVRSQRKGAIQTRGQMQCVQEFEQYLKP FRIVFASKAENSHEFTLQQYLNRQKHVLHGYELRKLKYIPKVLYIVCEKLLQLAGKGTALVKMHSKMRTMNIQSEVDLLK KSNNSSGIPRNFSHDSLNSDTVPHKKLTKTKSVSMEDLDNEKLKTVLDGHESDSSSSSKPSLTLRQESGDVDSLCSGNDV ASCSVQDIISALTASDVSQEQLDKADMYEVNLNVKEEGWNEFAMENDPVVVSQVAWDWLDQLKEPILRRQDMNKMLDHVE DPETGLQKLEKMIRFLRQ |
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