Gene
| Gene Model ID | pfu_aug2.0_2576.1_22113 |
|---|---|
| Locus | scaffold2576.1 : 66886 ... 81456 : + |
| To GenomeBrowser | scaffold2576.1:66886..81456 |
| Genes list of scaffold | scaffold2576.1 |
| Synonym | pfu_aug1.0_14121.1_46715 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_2576.1_22113.t1 | 1 | 1 | RVT_1 | 153 | 250 | 1.4e-15 | 57.2 | 9.6e-19 | 3.5e-15 | 55.9 |
| pfu_aug2.0_2576.1_22113.t1 | 1 | 1 | rve | 388 | 465 | 3.7e-14 | 52.8 | 1.9e-17 | 7.2e-14 | 51.9 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_2576.1_22113.t1 | gi|546297807|ref|XP_005710330.1| | retrotransposon protein [Chondrus crispus] | 2.0e-23 |
| pfu_aug2.0_2576.1_22113.t1 | gi|530574298|ref|XP_005281549.1| | PREDICTED: uncharacterized protein LOC101945219 [Chrysemys picta bellii] | 7.0e-23 |
Transcript
| Transcript ID | pfu_aug2.0_2576.1_22113.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_2576.1_22113.t1 atgactgagctccgtaaaattaaacaaactcccgaggaaagtgttcagttgtattcagagcgtttactccgattggctga agatgcatacattgctccttttgatgaaatagaatctgcttttattcagaaacaattggttgacattttctgtgacggtc tgttttatgattacttgagaatgaaagttctgagatgtgacacaagaggttatgatgaggcagttgaaattgcaatgaag gagcaaaatttacgaaaagaccctgaatccgaagaaaacggagaagtttcccctactaaaagtaaaaagacgaatgtgaa aacaccctacctaaacagaaaccgatatatactgttaaaagttcagaagactccaaacaaaactctcatcaagtacaaga gcactgaacaacattgttcgaccgatattgggtactggcaagtaacattagatgaaagtagcaaggagaagacagcgttc gcatatcatcgaggtctatttgaatttaacagaatgccttttggtctgagtaatgcccttgcgatattccagaaacttat gaatattgttctacaaggatatgaggggttcgccatggcttatttagatgacattttgattttctctaaagacgacccaa agcagcatataaggcacattcaagaagtattcaaccgactgagacaacacaacctcaagctgaaactaaagaaatgtgct ttctttaaagaggagacagaatacttaggatctctgtcccgtataccgcattctaagacaaacgaaaagtgcaaagaatc cgacgaagaacctgatattgacgatagaacatttgagataggagtaataaattcgaacgagatcaacccaagggactttg caaactgtcactttgaagatcgacaagatatcacaaaagctgtctcagatttacctgaagagttcaacttaaaagacgaa caggaaaaagatccagaagtagtgagaataaagaacagactaagaaaaggaacagccacgaaagctgaacaaacacacta ttttgaggataaggaaggactattttatcacctctctcagccggactctgaggatccaaagctaagactgtatatacctc aagaaatggagacagtcgtcgtcaggcaacatatatggccagaggctttcgccgtgcctgacaagtctgcagatcgaaat gtgcatcttattttagaagaaattttcccgagatttggttgccccttggagattatctcggacaacggaacagaaaatgt agataggaaagtacaggaaactttgtatacgatgaacattcatcacatcaagatatcctactacagtccccaggcaaatg gtaaagtcgaaagatttcaccgaactcttcatgacgtcatgtctaagaaaattcaagaagacgtccaaacgtttgatttg tacttaaatcagacactagccgccactaggtttcatgtcaatgaatcatcgaagttttctccatacattctcctatataa tagagacgttgtacttccactggacaccattgtaaagccaagacgtagatatgtgggtgaagatcaacatcaaatcgctc ttcaacagcagcacacatcttttacattggttcatagaaacatgaaagaagctaaaaagaaacagacgaagtacgcagac aaaaaaactgaagatggctggagtttcagtgaataccgagtgaataatggcgaccagtttggtccttttaattgcacttc ctcaatgaactcatctgtgcaatggaagacaccaagagggactgtgcataccaatactttattcatagcaaacgtcactt caagtgattttggagactatttatgcatacaaaattatgggagagggaataaatgcaatgtcatatccctcctaccgacg tctttgagtaccttgcaaggaatttgtaatagctatttaaatcatcgtgctgacggaaaggcttcaaattatagtatcta tacaaagcacgatttatttaagttggttaccataagagaaggtgcaacgttttccgccaagtgctttgccgactgttacc cagcatgtcaatggtatcgttggtactatcctggagggatgaccgatacccaaactttgactttgtataatgttaactca tcattacgatatgatgtaggaggtgaggtgtactgtgtagcttggaatgactgtcattggccacatagttctcgcggaat agaacttaatgtagcatgtgagtcaatttcttattcttattctaacggtcaccttaatacatga |
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Protein
| Protein ID | pfu_aug2.0_2576.1_22113.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_2576.1_22113.t1 MTELRKIKQTPEESVQLYSERLLRLAEDAYIAPFDEIESAFIQKQLVDIFCDGLFYDYLRMKVLRCDTRGYDEAVEIAMK EQNLRKDPESEENGEVSPTKSKKTNVKTPYLNRNRYILLKVQKTPNKTLIKYKSTEQHCSTDIGYWQVTLDESSKEKTAF AYHRGLFEFNRMPFGLSNALAIFQKLMNIVLQGYEGFAMAYLDDILIFSKDDPKQHIRHIQEVFNRLRQHNLKLKLKKCA FFKEETEYLGSLSRIPHSKTNEKCKESDEEPDIDDRTFEIGVINSNEINPRDFANCHFEDRQDITKAVSDLPEEFNLKDE QEKDPEVVRIKNRLRKGTATKAEQTHYFEDKEGLFYHLSQPDSEDPKLRLYIPQEMETVVVRQHIWPEAFAVPDKSADRN VHLILEEIFPRFGCPLEIISDNGTENVDRKVQETLYTMNIHHIKISYYSPQANGKVERFHRTLHDVMSKKIQEDVQTFDL YLNQTLAATRFHVNESSKFSPYILLYNRDVVLPLDTIVKPRRRYVGEDQHQIALQQQHTSFTLVHRNMKEAKKKQTKYAD KKTEDGWSFSEYRVNNGDQFGPFNCTSSMNSSVQWKTPRGTVHTNTLFIANVTSSDFGDYLCIQNYGRGNKCNVISLLPT SLSTLQGICNSYLNHRADGKASNYSIYTKHDLFKLVTIREGATFSAKCFADCYPACQWYRWYYPGGMTDTQTLTLYNVNS SLRYDVGGEVYCVAWNDCHWPHSSRGIELNVACESISYSYSNGHLNT |
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