Gene
| Gene Model ID | pfu_aug2.0_258.1_27132 |
|---|---|
| Locus | scaffold258.1 : 330065 ... 339277 : + |
| To GenomeBrowser | scaffold258.1:330065..339277 |
| Genes list of scaffold | scaffold258.1 |
| Synonym | pfu_aug1.0_38346.1_34066 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_258.1_27132.t1 | 2 | 1 | NRDE-2 | 70 | 93 | 0.0 | 211.8 | 0.6 | 4500.0 | -3.8 |
| pfu_aug2.0_258.1_27132.t1 | 2 | 2 | NRDE-2 | 275 | 508 | 0.0 | 211.8 | 0.0 | 0.0 | 211.8 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_258.1_27132.t1 | gi|701376958|ref|XP_009987573.1| | PREDICTED: LOW QUALITY PROTEIN: protein NRDE2 homolog, partial [Tauraco erythrolophus] | 0.0 |
| pfu_aug2.0_258.1_27132.t1 | gi|677983050|ref|XP_009073864.1| | PREDICTED: protein NRDE2 homolog, partial [Acanthisitta chloris] | 0.0 |
| pfu_aug2.0_258.1_27132.t1 | gi|514791906|ref|XP_005030327.1| | PREDICTED: protein NRDE2 homolog [Anas platyrhynchos] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_258.1_27132.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_258.1_27132.t1 atgataatttactttgttatagagggatctttagactggctggaaaataagagttttcctgtgcagcagttgacaacaga ggcaagcagtgccggtattgagaaatctgtgccattgtatcaagctgttgattcacatgaaagcaatcaagaagaaaaag ctgtgaaaaagcatgataacagctcatctgaagatgactatcataaagaaaagaagaagaggaagaaagagaagcataag cacaaaaagaagaagcacaagtcagagaaagaaaggaatgttagtccatacagagagagtgacttagatattaaaaggaa gaagacaatttatggtaataaagtatttatagatgaaatccgtgatttggaggcaaaggatgcttttcgtattgacagaa gatcgaatgcagagaattggaattaccagtctttgtacaaaggtcatatagcaaaatttcacaacacatatcgtacttgc atgggtcagactgatggtgaacctttgtatgtaaaagagaagattgaaaaggacatcaaaaaggagaagaagcggtacta tagcaaagaaaatgccagagtagcaaatagagcaccgattgagagattatgcacagacgacgcaagttccaaaaatagcc aaactgttcttcctgaaaaaatgctactccctagtgagccaatcatgaaggacagaattagagatgtggatgtgagagaa aaactgcttgacgctgatactaaattatatgttgaaggcaagggaagcattaaagatgatattgatgaaggtgaaatttc tgctgacgttttggcatcgcatcgtaagattgaagaatataacataaaactaagagaggatccacataatgttcctctgt ggttagaatttgtgaagtatcaggacaagagaagtgatcctgcagatagtgtgacaaaaggcaaagaagaggtcaaaata tcaaaattggccctgcatgaaaagaaggtggcagttatgaagaaagctatggaaagtaatcaaggaaatctggaactaaa gatgaaataccttgaactttgtcaagagacttgggaaccccatcaaatcagtaaggaaatagaagacatgttgtttgtac agccaactaatctgtcactatggcaacattatttattatttcatcagagtcgtctatcatcattcagcgtcacaaggatg agtaagatgtatcagaaatgcctgaagacattgttgaagtacagtaccggtaaaatacatactgctgtttccacaggaga tgttccacaaaaaatgttagttatactcagtcagtacctaaacttcctcaaacagacgggacttacagagagagccgtag ctactttccaagccttggtggaatttaacctattctgtccaatcaaatacaaggaggagtctatggaaaatagaaaagca ttgtttgagagcttttgggatagtaatgtgcccagggtaggggaggagggagctaaagggtggagcttctatgcagaaag caagattgtggaacctacaaagaaaacggaagatgaaggcaagatctttgnctctatcagttatagtgtcagaagagttg tccggacaagattacatagaatttaa |
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Protein
| Protein ID | pfu_aug2.0_258.1_27132.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_258.1_27132.t1 MIIYFVIEGSLDWLENKSFPVQQLTTEASSAGIEKSVPLYQAVDSHESNQEEKAVKKHDNSSSEDDYHKEKKKRKKEKHK HKKKKHKSEKERNVSPYRESDLDIKRKKTIYGNKVFIDEIRDLEAKDAFRIDRRSNAENWNYQSLYKGHIAKFHNTYRTC MGQTDGEPLYVKEKIEKDIKKEKKRYYSKENARVANRAPIERLCTDDASSKNSQTVLPEKMLLPSEPIMKDRIRDVDVRE KLLDADTKLYVEGKGSIKDDIDEGEISADVLASHRKIEEYNIKLREDPHNVPLWLEFVKYQDKRSDPADSVTKGKEEVKI SKLALHEKKVAVMKKAMESNQGNLELKMKYLELCQETWEPHQISKEIEDMLFVQPTNLSLWQHYLLFHQSRLSSFSVTRM SKMYQKCLKTLLKYSTGKIHTAVSTGDVPQKMLVILSQYLNFLKQTGLTERAVATFQALVEFNLFCPIKYKEESMENRKA LFESFWDSNVPRVGEEGAKGWSFYAESKIVEPTKKTEDEGKIFXSISYSVRRVVRTRLHRI |
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