Gene
| Gene Model ID | pfu_aug2.0_2581.1_05588 |
|---|---|
| Locus | scaffold2581.1 : 20016 ... 23406 : + |
| To GenomeBrowser | scaffold2581.1:20016..23406 |
| Genes list of scaffold | scaffold2581.1 |
| Synonym | pfu_aug1.0_7893.1_38658 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_2581.1_05588.t1 | 2 | 1 | zf-C3HC4_2 | 26 | 70 | 1.6e-07 | 31.2 | 8.7e-11 | 1.6e-07 | 31.2 |
| pfu_aug2.0_2581.1_05588.t1 | 2 | 1 | zf-C3HC4 | 26 | 70 | 7.1e-07 | 28.7 | 3.8e-10 | 7.1e-07 | 28.7 |
| pfu_aug2.0_2581.1_05588.t1 | 2 | 1 | zf-C3HC4_4 | 26 | 70 | 2.6e-06 | 27.2 | 1.4e-09 | 2.6e-06 | 27.2 |
| pfu_aug2.0_2581.1_05588.t1 | 2 | 1 | zf-RING_2 | 26 | 70 | 6.4e-06 | 25.8 | 3.5e-09 | 6.4e-06 | 25.8 |
| pfu_aug2.0_2581.1_05588.t1 | 2 | 2 | zf-C3HC4 | 212 | 228 | 7.1e-07 | 28.7 | 0.62 | 1100.0 | -0.7 |
| pfu_aug2.0_2581.1_05588.t1 | 2 | 2 | zf-C3HC4_4 | 213 | 225 | 2.6e-06 | 27.2 | 1.9 | 3500.0 | -2.1 |
| pfu_aug2.0_2581.1_05588.t1 | 2 | 2 | zf-RING_2 | 225 | 227 | 6.4e-06 | 25.8 | 3.8 | 7100.0 | -3.1 |
| pfu_aug2.0_2581.1_05588.t1 | 2 | 2 | zf-C3HC4_2 | 226 | 226 | 1.6e-07 | 31.2 | 7.4 | 14000.0 | -3.8 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_2581.1_05588.t1 | gi|524873687|ref|XP_005093587.1| | PREDICTED: tripartite motif-containing protein 59-like [Aplysia californica] | 3.0e-11 |
| pfu_aug2.0_2581.1_05588.t1 | gi|260825454|ref|XP_002607681.1| | hypothetical protein BRAFLDRAFT_123270 [Branchiostoma floridae] | 4.0e-08 |
| pfu_aug2.0_2581.1_05588.t1 | gi|260803009|ref|XP_002596384.1| | hypothetical protein BRAFLDRAFT_215487 [Branchiostoma floridae] | 8.0e-08 |
| pfu_aug2.0_2581.1_05588.t1 | gi|676489682|ref|XP_009065019.1| | hypothetical protein LOTGIDRAFT_71142, partial [Lottia gigantea] | 9.0e-08 |
Transcript
| Transcript ID | pfu_aug2.0_2581.1_05588.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_2581.1_05588.t1 atggaggaagaagatatcatagaggattattttagcgcagatacagggaaactgggggaaaacaggaatctccggtgtaa gatgtgcgaatcaaactttatggaccccaaagtactaccatgcggtcacactttttgcaaacgctgtgttatcgatcatt tacagcataacaccgaaaccgaaagtagtggatttttgtgcccatcatgttccgaatttgttccgatcacaagcaatgcc gaagaagatgcaggtaattggagcgactttttagaggacaatttaatagttgcaggtatgattgatattatctcatcttc agattttgaggatgttaaccctatcgaaggctgtgaagatgtggtgaaatcggccgatgtcactgcagtgcattttgaga aagcagaaaaagtatcgaaattggcaatggctaacgtaaaactggcaaaagtccttatggtgaatctaacagataaatca gtagaactaatgattaatagagatgatgtgaagtcagaactacgcaaagcaaaagaggaaatgataaagaacttaaacgc tgcggaagcggagctttgcaaagagctagacgaagcttacagccatcgatcaagtctctacgaggaacggctaaaatgct gcaaatcaatcatcaaggaggcaacaaagacaagaaactgcatggatgtcttgaagaaagtccagtgtccagagttcatc gtaaattcctccattgaaagccaggttttgtgcgaatcagaattagcgcttttggacgaaataagaagcaccactctaga gagcaagatcttatttactcagagttccactctaggaccatttcttcgagactacaaacattttggtcaactaactgtct ccgactccgttatgacgtcatcttgtatgatggagccccatcttgcgacacaacaaagcttttcattggacgagataccg agcatgctgaaagtcacgcaatgtctgaacgctcgcctagcagacgacagctataattgctggatcaccggggttacgtt tctgaaaaacgacaacatcgtccttgtggacagaaactatgaaaaggttaaactgttttcgagagaaaataatcatcttc attctataaagctttcgtcatcaaaaacgacattatttgccatcacgtctagtaaggaccatgaggtagctgtcaccctc cccgttcagcacaccgtccagtttctatccactctagaggacactttgattcccacactttacgactatcacgacgaatt agtaagggatatcatatttgacaacgaagggaaacccttattcaccatgctttcatctgcaaacattgcattcgatctaa tcaacaatcgtctggctgttgtggaccaaccgatgtaccgacactcagttgtaacattcaatatggatggttcaaagaag tcacgggactacatgccgtatctaagcgacaatgcttgtggaatagtttacctgaagtctcagctttgtatcgcattggg taaccgaggattcggaaaaatctcagaaaccgaggatggagaacggactgtaaccgagatgggagtagactacaaattca acagtccgtacgccatgtctgtgaactatacgaacgataaaatcgccatatcccaggcaaatcccacattcaatttcagc tccaataatgacgtcatcattgcggctgctatcagcgatacgtacctctttgagaaacaagagtga |
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Protein
| Protein ID | pfu_aug2.0_2581.1_05588.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_2581.1_05588.t1 MEEEDIIEDYFSADTGKLGENRNLRCKMCESNFMDPKVLPCGHTFCKRCVIDHLQHNTETESSGFLCPSCSEFVPITSNA EEDAGNWSDFLEDNLIVAGMIDIISSSDFEDVNPIEGCEDVVKSADVTAVHFEKAEKVSKLAMANVKLAKVLMVNLTDKS VELMINRDDVKSELRKAKEEMIKNLNAAEAELCKELDEAYSHRSSLYEERLKCCKSIIKEATKTRNCMDVLKKVQCPEFI VNSSIESQVLCESELALLDEIRSTTLESKILFTQSSTLGPFLRDYKHFGQLTVSDSVMTSSCMMEPHLATQQSFSLDEIP SMLKVTQCLNARLADDSYNCWITGVTFLKNDNIVLVDRNYEKVKLFSRENNHLHSIKLSSSKTTLFAITSSKDHEVAVTL PVQHTVQFLSTLEDTLIPTLYDYHDELVRDIIFDNEGKPLFTMLSSANIAFDLINNRLAVVDQPMYRHSVVTFNMDGSKK SRDYMPYLSDNACGIVYLKSQLCIALGNRGFGKISETEDGERTVTEMGVDYKFNSPYAMSVNYTNDKIAISQANPTFNFS SNNDVIIAAAISDTYLFEKQE |
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