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OIST Marine Genomics Unit since 2008

Gene
Gene Model IDpfu_aug2.0_2581.1_05589
Locus scaffold2581.1 : 25377 ... 40725 : -
To GenomeBrowser scaffold2581.1:25377..40725
Genes list of scaffold scaffold2581.1
Synonym pfu_aug1.0_17458.1_03829

Manual annotation
Hmmer Search for Pfam
query Total ID Target From To Eval Score cEval iEval Score
pfu_aug2.0_2581.1_05589.t2 6 1 Kelch_2 14 53 4.3e-23 80.1 0.36 750.0 0.1
pfu_aug2.0_2581.1_05589.t2 6 1 Kelch_5 63 81 4.7e-18 64.7 0.0026 5.4 7.0
pfu_aug2.0_2581.1_05589.t2 4 1 Kelch_1 64 108 2.2e-37 126.3 4.6e-13 9.8e-10 37.8
pfu_aug2.0_2581.1_05589.t2 5 1 Kelch_6 64 111 1.8e-30 103.8 2.4e-11 5.1e-08 32.7
pfu_aug2.0_2581.1_05589.t2 5 1 Kelch_4 67 109 5.4e-27 93.3 6.5e-08 0.00014 21.5
pfu_aug2.0_2581.1_05589.t2 6 2 Kelch_2 67 108 4.3e-23 80.1 9.1e-06 0.019 14.6
pfu_aug2.0_2581.1_05589.t2 5 1 Kelch_3 72 117 3.8e-23 81.0 2.9e-10 6.1e-07 29.4
pfu_aug2.0_2581.1_05589.t2 6 2 Kelch_5 107 146 4.7e-18 64.7 1.7e-06 0.0036 17.2
pfu_aug2.0_2581.1_05589.t2 4 2 Kelch_1 110 153 2.2e-37 126.3 3.0e-13 6.4e-10 38.4
pfu_aug2.0_2581.1_05589.t2 5 2 Kelch_6 111 150 1.8e-30 103.8 2.3e-09 4.9e-06 26.4
pfu_aug2.0_2581.1_05589.t2 6 3 Kelch_2 111 151 4.3e-23 80.1 5.6e-07 0.0012 18.5
pfu_aug2.0_2581.1_05589.t2 5 2 Kelch_4 115 155 5.4e-27 93.3 2.3e-11 4.9e-08 32.6
pfu_aug2.0_2581.1_05589.t2 5 2 Kelch_3 121 166 3.8e-23 81.0 2.3e-11 4.8e-08 32.9
pfu_aug2.0_2581.1_05589.t2 6 3 Kelch_5 157 181 4.7e-18 64.7 1.2e-06 0.0026 17.6
pfu_aug2.0_2581.1_05589.t2 4 3 Kelch_1 158 188 2.2e-37 126.3 8.6e-08 0.00018 20.9
pfu_aug2.0_2581.1_05589.t2 5 3 Kelch_6 158 188 1.8e-30 103.8 1.4e-06 0.0029 17.7
pfu_aug2.0_2581.1_05589.t2 5 3 Kelch_4 158 197 5.4e-27 93.3 2.0e-08 4.3e-05 23.1
pfu_aug2.0_2581.1_05589.t2 6 4 Kelch_2 158 188 4.3e-23 80.1 4.9e-05 0.1 12.3
pfu_aug2.0_2581.1_05589.t2 5 3 Kelch_3 169 196 3.8e-23 81.0 0.049 100.0 3.2
pfu_aug2.0_2581.1_05589.t2 6 4 Kelch_5 205 227 4.7e-18 64.7 0.064 140.0 2.6
pfu_aug2.0_2581.1_05589.t2 6 5 Kelch_2 210 227 4.3e-23 80.1 0.0025 5.3 6.9
pfu_aug2.0_2581.1_05589.t2 5 4 Kelch_6 213 229 1.8e-30 103.8 0.12 250.0 2.1
pfu_aug2.0_2581.1_05589.t2 5 4 Kelch_4 215 226 5.4e-27 93.3 2.7 5700.0 -2.8
pfu_aug2.0_2581.1_05589.t2 5 4 Kelch_3 279 296 3.8e-23 81.0 0.2 430.0 1.2
pfu_aug2.0_2581.1_05589.t2 6 5 Kelch_5 279 285 4.7e-18 64.7 3.4 7300.0 -3.0
pfu_aug2.0_2581.1_05589.t2 6 6 Kelch_5 289 310 4.7e-18 64.7 2.1e-06 0.0045 16.9
pfu_aug2.0_2581.1_05589.t2 4 4 Kelch_1 290 331 2.2e-37 126.3 4.7e-09 9.9e-06 25.0
pfu_aug2.0_2581.1_05589.t2 5 5 Kelch_6 290 331 1.8e-30 103.8 5.6e-07 0.0012 18.9
pfu_aug2.0_2581.1_05589.t2 6 6 Kelch_2 290 332 4.3e-23 80.1 2.3e-07 0.00048 19.7
pfu_aug2.0_2581.1_05589.t2 5 5 Kelch_4 291 311 5.4e-27 93.3 1.7e-05 0.036 13.8
pfu_aug2.0_2581.1_05589.t2 5 5 Kelch_3 299 331 3.8e-23 81.0 0.0022 4.6 7.5

Blast Hit to nr / sp
query Subject ID Subject Name evalue
pfu_aug2.0_2581.1_05589.t2 gi|260798879|ref|XP_002594427.1| hypothetical protein BRAFLDRAFT_119957 [Branchiostoma floridae] 2.0e-17

Transcript
Transcript IDpfu_aug2.0_2581.1_05589.t1
Definition-
>pfu_aug2.0_2581.1_05589.t1
atgagcgttaatggcttgccgtccgtacataaatccaccaccaccacttccttcttgcagtcccggctgtacactattag
tcggtccggatccggtgaagccttttacgtcatcataagtccgcatcatgacgaaatcttgtcgtaccaaatcagaatcg
aacattggaaggctacgaagcacgtggctgattttggtgtagcagtttatagaaatgttctctatgttatcggaggattc
aatatcaagacggcaaaacatttgaaaacagtggtcagatataatcccgatgatggactttggaaagaagtgcagtccat
gccaacagccagagccaaatttgcaacagccgtacaggacggaaaaatcttagtattaggtggtgaaggtcaagacggca
gagttacctcctcctgttattcatacgatccggagacggatgaatggacgatttcctcctcattagtgtcgcctagagcc
aatcacgcatgcgtagtatgcaacaaagaaatttattgttccggtgggagatacgggaataaaagtcataaaaatatctg
ggtgaaggagggaggggactgggaggatcttggaaggccgtacccccagaagctgcccgtcccactcgatagactagcga
tgaccacctggaggagacaaatattctttgtcggcggagtatattgtaaaaaggatagaaaggacgaaaaacgtaaattc
ctgactgaagcccggatgttttcatatacaaccagcgtgtcggccatgagctcatcacgtgacgaagcagacgatgggga
agatgaatacattcaacaagaatttctgtcaccatggagattagatttaccaaatatgaattttggaagacacagtcatg
gggcaatagctttaggtacatga
Transcript IDpfu_aug2.0_2581.1_05589.t2
Definition-
>pfu_aug2.0_2581.1_05589.t2
atgagcgttaatggcttgccgtccgtacataaatccaccaccaccacttccttcttgcagtcccggctgtacactattag
tcggtccggatccggtgaagccttttacgtcatcataagtccgcatcatgacgaaatcttgtcgtaccaaatcagaatcg
aacattggaaggctacgaagcacgtggctgattttggtgtagcagtttatagaaatgttctctatgttatcggaggattc
aatatcaagacggcaaaacatttgaaaacagtggtcagatataatcccgatgatggactttggaaagaagtgcagtccat
gccaacagccagagccaaatttgcaacagccgtacaggacggaaaaatcttagtattaggtggtgaaggtcaagacggca
gagttacctcctcctgttattcatacgatccggagacggatgaatggacgatttcctcctcattagtgtcgcctagagcc
aatcacgcatgcgtagtatgcaacaaagaaatttattgttccggtgggagatacgggaataaaagtcataaaaatatctg
ggtgaaggagggaggggactgggaggatcttggaaggccgtacccccagaagctgcccgtcccactcgatagactagcga
tgaccacctggaggagacaaatattctttgtcggcggagtatattgtaaaaaggatagaaaggacgaaaaacgtaaattc
ctgactgaagcccggatgttttcatatacaaccagcgtgtcggccatgagctcatcacgtgacgaagcagacgatgggga
agatgaatacattcaacaagaatttctgtcaccatggagattagatttaccaaatatgaattttggaagacacagtcatg
gggcaatagctttaggtgacaagatctacgtgtttggaggcagccaattagagagtggcttacaagttagggaggtggag
tttttcgatttgtgtaaaggagtatgggaagaggacttccgcttccggaaaggtgacgtttctaatgtgacttgtgcaat
tctagaggttccttacaaacatgatgaacataaacttaatgcaaaattaaaatgggtcatgtggtag

Protein
Protein IDpfu_aug2.0_2581.1_05589.t1
Definition-
>pfu_aug2.0_2581.1_05589.t1
MSVNGLPSVHKSTTTTSFLQSRLYTISRSGSGEAFYVIISPHHDEILSYQIRIEHWKATKHVADFGVAVYRNVLYVIGGF
NIKTAKHLKTVVRYNPDDGLWKEVQSMPTARAKFATAVQDGKILVLGGEGQDGRVTSSCYSYDPETDEWTISSSLVSPRA
NHACVVCNKEIYCSGGRYGNKSHKNIWVKEGGDWEDLGRPYPQKLPVPLDRLAMTTWRRQIFFVGGVYCKKDRKDEKRKF
LTEARMFSYTTSVSAMSSSRDEADDGEDEYIQQEFLSPWRLDLPNMNFGRHSHGAIALGT
Protein IDpfu_aug2.0_2581.1_05589.t2
Definition-
>pfu_aug2.0_2581.1_05589.t2
MSVNGLPSVHKSTTTTSFLQSRLYTISRSGSGEAFYVIISPHHDEILSYQIRIEHWKATKHVADFGVAVYRNVLYVIGGF
NIKTAKHLKTVVRYNPDDGLWKEVQSMPTARAKFATAVQDGKILVLGGEGQDGRVTSSCYSYDPETDEWTISSSLVSPRA
NHACVVCNKEIYCSGGRYGNKSHKNIWVKEGGDWEDLGRPYPQKLPVPLDRLAMTTWRRQIFFVGGVYCKKDRKDEKRKF
LTEARMFSYTTSVSAMSSSRDEADDGEDEYIQQEFLSPWRLDLPNMNFGRHSHGAIALGDKIYVFGGSQLESGLQVREVE
FFDLCKGVWEEDFRFRKGDVSNVTCAILEVPYKHDEHKLNAKLKWVMW

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