Gene
| Gene Model ID | pfu_aug2.0_259.1_30515 |
|---|---|
| Locus | scaffold259.1 : 49266 ... 65545 : + |
| To GenomeBrowser | scaffold259.1:49266..65545 |
| Genes list of scaffold | scaffold259.1 |
| Synonym | pfu_aug1.0_83.1_50615 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_259.1_30515.t3 | 2 | 1 | PseudoU_synth_1 | 109 | 232 | 4.5e-17 | 62.4 | 1.2e-15 | 1.8e-11 | 44.3 |
| pfu_aug2.0_259.1_30515.t3 | 2 | 2 | PseudoU_synth_1 | 257 | 297 | 4.5e-17 | 62.4 | 1.3e-06 | 0.019 | 15.3 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_259.1_30515.t3 | gi|260781560|ref|XP_002585875.1| | hypothetical protein BRAFLDRAFT_110975 [Branchiostoma floridae] | 0.0 |
| pfu_aug2.0_259.1_30515.t3 | gi|390365271|ref|XP_794710.3| | 0.0 | |
| pfu_aug2.0_259.1_30515.t3 | gi|558158863|ref|XP_006122378.1| | PREDICTED: tRNA pseudouridine(38/39) synthase-like isoform X1 [Pelodiscus sinensis] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_259.1_30515.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_259.1_30515.t1 atgtttaggcgttggcgcacaggatggcgatgtttccatggaaaccattccaagagaaaacggttcaaacgaaaactcga caatgcgcaaaggatcgaggaggggaccgaaggatcctacacgtacttgtgggacggggatattccagaaacgctttccg gggccgacaaggatctcatcaacagagtgaggcagttggaatcacacgtgaaacagctcagaaatgttgtactcaaaggc cagggcgaaaatcaggccaggaaaaaggccaaaggccgagaattcgacttcaaaaagtacaacacgagacatgtggcttt aaagatcctgtacatgggttgggattaccatggatttgctgtacaagaggagacagagaaaaccatcgaggctgccctct ttgatgcactgctcaaaactaagctcattgagtccagagaaacttcaaactaccatagatgtgggagaacagacaaaggt gtcagtgcttttggtcaggttatatccattgacctccgctcaaatctgctagaggggccaggggtcaaggtcagagaggg aggttcagctcatgagagatcaggtgacaagaccactgagattcgatactgtcatatactcaacaaagtgcttcctccag aaatacgctgtctggcttgggtgccggtcaacgtagattttagtgctagatttgactgcaagaaaaggacatataaatat tacttccctaaagctaacttggatctcaaattaatgcaggatgctgcctgtaagctgatcggtgaacatgatttccggaa tctatgtaaaatggacgtaggaaatggagtgaccaattataaacggaggataatctcagcagaaataaacaccgtcggtg aattcacgggtggttatcagatgtgtgaattgacgatagtcggtatggcattcctctggcatcagatacgttgtattgtc tcagtgttgttcatggttggtcaaggcaaagaaaggccggagatcatagaagagttactagacatagaaaggttgccaag gaaaccacagtatacaatggcttctgaaattccactgaacttgtttgaggcagaatttacaaatgatttagagtggatat atgaagtggattggcatgaggagaatataaagcatctacaacaactttgggcacagcacgctgtaaaagctcagatgtta aagagcatactagatgagatggacaaagctaaggttgaaacagattgtgatatagcaccatgggcagatttgtgtggacc tgtttataaccaatcagaatggatcattccagctcgtactaaagtccataaaccgttactggacagacagacatgtgaat ctctagaggaaagaatggagcattttgccaagaggaggaaaacatcgcatccacaacaggaagtagaacagacatga |
|
| Transcript ID | pfu_aug2.0_259.1_30515.t2 |
| Definition | - |
>pfu_aug2.0_259.1_30515.t2 atgtgtgaattgacgatagtcggtatggcattcctctggcatcagatacgttgtattgtctcagtgttgttcatggttgg tcaaggcaaagaaaggccggagatcatagaagagttactagacatagaaaggttgccaaggaaaccacagtatacaatgg cttctgaaattccactgaacttgtttgaggcagaatttacaaatgatttagagtggatatatgaagtggattggcatgag gagaatataaagcatctacaacaactttgggcacagcacgctgtaaaagctcagatgttaaagagcatactagatgagat ggacaaagctaaggttgaaacagattgtgatatagcaccatgggcagatttgtgtggacctgtttataaccaatcagaat ggatcattccagctcgtactaaagtccataaaccgttactggacagacagacatgtgaatctctagaggaaagaatggag cattttgccaagaggaggaaaacatcgcatccacaacaggaagtagaacagacatga |
|
| Transcript ID | pfu_aug2.0_259.1_30515.t3 |
| Definition | - |
>pfu_aug2.0_259.1_30515.t3 atgtttaggcgttggcgcacaggatggcgatgtttccatggaaaccattccaagagaaaacggttcaaacgaaaactcga caatgcgcaaaggatcgaggaggggaccgaaggatcctacacgtacttgtgggacggggatattccagaaacgctttccg gggccgacaaggatctcatcaacagagtgaggcagttggaatcacacgtgaaacagctcagaaatgttgtactcaaaggc cagggcgaaaatcaggccaggaaaaaggccaaaggccgagaattcgacttcaaaaagtacaacacgagacatgtggcttt aaagatcctgtacatgggttgggattaccatggatttgctgtacaagaggagacagagaaaaccatcgaggctgccctct ttgatgcactgctcaaaactaagctcattgagtccagagaaacttcaaactaccatagatgtgggagaacagacaaaggt gtcagtgcttttggtcaggttatatccattgacctccgctcaaatctgctagaggggccaggggtcaaggtcagagaggg aggttcagctcatgagagatcaggtgacaagaccactgagattcgatactgtcatatactcaacaaagtgcttcctccag aaatacgctgtctggcttgggtgccggtcaacgtagattttagtgctagatttgactgcaagaaaaggacatataaatat tacttccctaaagctaacttggatctcaaattaatgcaggatgctgcctgtaagctgatcggtgaacatgatttccggaa tctatgtaaaatggacgtaggaaatggagtgaccaattataaacggaggataatctcagcagaaataaacaccgtcggtg aattgataaggaacaggcatctgttcagagtcagaggggctactttaatgatcatgatcaatcaggattcagattcaaac tctgtgcttgatgggggacattcccactgtccgagttgccctattctgttactgaacatgaactactttctgttgtttct tttatag |
|
Protein
| Protein ID | pfu_aug2.0_259.1_30515.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_259.1_30515.t1 MFRRWRTGWRCFHGNHSKRKRFKRKLDNAQRIEEGTEGSYTYLWDGDIPETLSGADKDLINRVRQLESHVKQLRNVVLKG QGENQARKKAKGREFDFKKYNTRHVALKILYMGWDYHGFAVQEETEKTIEAALFDALLKTKLIESRETSNYHRCGRTDKG VSAFGQVISIDLRSNLLEGPGVKVREGGSAHERSGDKTTEIRYCHILNKVLPPEIRCLAWVPVNVDFSARFDCKKRTYKY YFPKANLDLKLMQDAACKLIGEHDFRNLCKMDVGNGVTNYKRRIISAEINTVGEFTGGYQMCELTIVGMAFLWHQIRCIV SVLFMVGQGKERPEIIEELLDIERLPRKPQYTMASEIPLNLFEAEFTNDLEWIYEVDWHEENIKHLQQLWAQHAVKAQML KSILDEMDKAKVETDCDIAPWADLCGPVYNQSEWIIPARTKVHKPLLDRQTCESLEERMEHFAKRRKTSHPQQEVEQT |
|
| Protein ID | pfu_aug2.0_259.1_30515.t2 |
| Definition | - |
>pfu_aug2.0_259.1_30515.t2 MCELTIVGMAFLWHQIRCIVSVLFMVGQGKERPEIIEELLDIERLPRKPQYTMASEIPLNLFEAEFTNDLEWIYEVDWHE ENIKHLQQLWAQHAVKAQMLKSILDEMDKAKVETDCDIAPWADLCGPVYNQSEWIIPARTKVHKPLLDRQTCESLEERME HFAKRRKTSHPQQEVEQT |
|
| Protein ID | pfu_aug2.0_259.1_30515.t3 |
| Definition | - |
>pfu_aug2.0_259.1_30515.t3 MFRRWRTGWRCFHGNHSKRKRFKRKLDNAQRIEEGTEGSYTYLWDGDIPETLSGADKDLINRVRQLESHVKQLRNVVLKG QGENQARKKAKGREFDFKKYNTRHVALKILYMGWDYHGFAVQEETEKTIEAALFDALLKTKLIESRETSNYHRCGRTDKG VSAFGQVISIDLRSNLLEGPGVKVREGGSAHERSGDKTTEIRYCHILNKVLPPEIRCLAWVPVNVDFSARFDCKKRTYKY YFPKANLDLKLMQDAACKLIGEHDFRNLCKMDVGNGVTNYKRRIISAEINTVGELIRNRHLFRVRGATLMIMINQDSDSN SVLDGGHSHCPSCPILLLNMNYFLLFLL |
|