Gene
| Gene Model ID | pfu_aug2.0_259.1_30521 |
|---|---|
| Locus | scaffold259.1 : 200453 ... 233577 : + |
| To GenomeBrowser | scaffold259.1:200453..233577 |
| Genes list of scaffold | scaffold259.1 |
| Synonym | pfu_aug1.0_5257.1_09076 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_259.1_30521.t1 | 4 | 1 | MIB_HERC2 | 4 | 65 | 9.8e-33 | 111.9 | 1.5e-17 | 2.2e-14 | 53.1 |
| pfu_aug2.0_259.1_30521.t1 | 3 | 1 | ZZ | 71 | 109 | 5.1e-08 | 32.3 | 3.4e-11 | 5.1e-08 | 32.3 |
| pfu_aug2.0_259.1_30521.t1 | 2 | 1 | zf-C3HC4_3 | 76 | 103 | 1.9e-08 | 33.8 | 3.5 | 5100.0 | -2.8 |
| pfu_aug2.0_259.1_30521.t1 | 4 | 2 | MIB_HERC2 | 78 | 96 | 9.8e-33 | 111.9 | 0.32 | 480.0 | 0.8 |
| pfu_aug2.0_259.1_30521.t1 | 4 | 3 | MIB_HERC2 | 145 | 212 | 9.8e-33 | 111.9 | 4.5e-21 | 6.7e-18 | 64.4 |
| pfu_aug2.0_259.1_30521.t1 | 4 | 4 | MIB_HERC2 | 290 | 312 | 9.8e-33 | 111.9 | 7.4 | 11000.0 | -3.6 |
| pfu_aug2.0_259.1_30521.t1 | 5 | 1 | Ank_2 | 446 | 536 | 0.0 | 159.4 | 3.8e-17 | 5.7e-14 | 52.2 |
| pfu_aug2.0_259.1_30521.t1 | 9 | 1 | Ank | 446 | 465 | 9.80068e-42 | 138.7 | 4.0 | 6000.0 | -2.6 |
| pfu_aug2.0_259.1_30521.t1 | 8 | 1 | Ank_5 | 446 | 465 | 3.09995e-41 | 138.4 | 0.4 | 590.0 | 0.9 |
| pfu_aug2.0_259.1_30521.t1 | 9 | 1 | Ank_4 | 447 | 481 | 4.0e-38 | 129.1 | 0.057 | 84.0 | 3.8 |
| pfu_aug2.0_259.1_30521.t1 | 8 | 2 | Ank_5 | 467 | 512 | 3.09995e-41 | 138.4 | 9.0e-09 | 1.3e-05 | 25.2 |
| pfu_aug2.0_259.1_30521.t1 | 9 | 2 | Ank | 474 | 503 | 9.80068e-42 | 138.7 | 1.1e-11 | 1.6e-08 | 33.9 |
| pfu_aug2.0_259.1_30521.t1 | 9 | 2 | Ank_4 | 475 | 517 | 4.0e-38 | 129.1 | 3.8e-12 | 5.6e-09 | 36.2 |
| pfu_aug2.0_259.1_30521.t1 | 9 | 1 | Ank_3 | 475 | 501 | 1.8e-28 | 95.7 | 2.7e-07 | 0.0004 | 20.3 |
| pfu_aug2.0_259.1_30521.t1 | 9 | 3 | Ank | 506 | 536 | 9.80068e-42 | 138.7 | 0.00019 | 0.28 | 11.0 |
| pfu_aug2.0_259.1_30521.t1 | 9 | 2 | Ank_3 | 506 | 533 | 1.8e-28 | 95.7 | 0.027 | 40.0 | 4.8 |
| pfu_aug2.0_259.1_30521.t1 | 9 | 3 | Ank_4 | 513 | 556 | 4.0e-38 | 129.1 | 7.1e-06 | 0.011 | 16.2 |
| pfu_aug2.0_259.1_30521.t1 | 5 | 2 | Ank_2 | 524 | 600 | 0.0 | 159.4 | 1.3e-14 | 1.9e-11 | 44.1 |
| pfu_aug2.0_259.1_30521.t1 | 8 | 3 | Ank_5 | 525 | 577 | 3.09995e-41 | 138.4 | 9.6e-11 | 1.4e-07 | 31.5 |
| pfu_aug2.0_259.1_30521.t1 | 9 | 3 | Ank_3 | 538 | 566 | 1.8e-28 | 95.7 | 3.4e-05 | 0.05 | 13.8 |
| pfu_aug2.0_259.1_30521.t1 | 9 | 4 | Ank | 539 | 569 | 9.80068e-42 | 138.7 | 2.4e-06 | 0.0036 | 17.0 |
| pfu_aug2.0_259.1_30521.t1 | 9 | 4 | Ank_4 | 553 | 580 | 4.0e-38 | 129.1 | 0.0014 | 2.0 | 9.0 |
| pfu_aug2.0_259.1_30521.t1 | 8 | 4 | Ank_5 | 561 | 613 | 3.09995e-41 | 138.4 | 3.6e-08 | 5.4e-05 | 23.3 |
| pfu_aug2.0_259.1_30521.t1 | 9 | 5 | Ank | 572 | 594 | 9.80068e-42 | 138.7 | 0.0057 | 8.4 | 6.4 |
| pfu_aug2.0_259.1_30521.t1 | 9 | 4 | Ank_3 | 572 | 598 | 1.8e-28 | 95.7 | 0.0051 | 7.5 | 7.1 |
| pfu_aug2.0_259.1_30521.t1 | 9 | 5 | Ank_4 | 573 | 618 | 4.0e-38 | 129.1 | 1.1e-07 | 0.00016 | 22.0 |
| pfu_aug2.0_259.1_30521.t1 | 8 | 5 | Ank_5 | 592 | 625 | 3.09995e-41 | 138.4 | 0.00054 | 0.8 | 10.0 |
| pfu_aug2.0_259.1_30521.t1 | 5 | 3 | Ank_2 | 606 | 671 | 0.0 | 159.4 | 5.3e-10 | 7.8e-07 | 29.3 |
| pfu_aug2.0_259.1_30521.t1 | 9 | 6 | Ank | 606 | 626 | 9.80068e-42 | 138.7 | 0.0042 | 6.2 | 6.8 |
| pfu_aug2.0_259.1_30521.t1 | 9 | 5 | Ank_3 | 606 | 619 | 1.8e-28 | 95.7 | 2.1 | 3100.0 | -1.0 |
| pfu_aug2.0_259.1_30521.t1 | 9 | 6 | Ank_4 | 609 | 660 | 4.0e-38 | 129.1 | 5.3e-07 | 0.00079 | 19.8 |
| pfu_aug2.0_259.1_30521.t1 | 8 | 6 | Ank_5 | 635 | 673 | 3.09995e-41 | 138.4 | 5.3e-07 | 0.00079 | 19.6 |
| pfu_aug2.0_259.1_30521.t1 | 9 | 7 | Ank | 639 | 664 | 9.80068e-42 | 138.7 | 2.7e-08 | 4.0e-05 | 23.2 |
| pfu_aug2.0_259.1_30521.t1 | 9 | 6 | Ank_3 | 641 | 663 | 1.8e-28 | 95.7 | 3.8e-06 | 0.0056 | 16.8 |
| pfu_aug2.0_259.1_30521.t1 | 9 | 7 | Ank_4 | 642 | 694 | 4.0e-38 | 129.1 | 1.8e-10 | 2.6e-07 | 30.9 |
| pfu_aug2.0_259.1_30521.t1 | 5 | 4 | Ank_2 | 644 | 718 | 0.0 | 159.4 | 1.7e-18 | 2.5e-15 | 56.5 |
| pfu_aug2.0_259.1_30521.t1 | 8 | 7 | Ank_5 | 659 | 714 | 3.09995e-41 | 138.4 | 3.6e-14 | 5.4e-11 | 42.3 |
| pfu_aug2.0_259.1_30521.t1 | 9 | 8 | Ank | 675 | 704 | 9.80068e-42 | 138.7 | 3.9e-11 | 5.8e-08 | 32.1 |
| pfu_aug2.0_259.1_30521.t1 | 9 | 8 | Ank_4 | 675 | 714 | 4.0e-38 | 129.1 | 3.6e-12 | 5.4e-09 | 36.3 |
| pfu_aug2.0_259.1_30521.t1 | 9 | 7 | Ank_3 | 676 | 701 | 1.8e-28 | 95.7 | 7.4e-08 | 0.00011 | 22.0 |
| pfu_aug2.0_259.1_30521.t1 | 9 | 9 | Ank | 706 | 761 | 9.80068e-42 | 138.7 | 0.002 | 3.0 | 7.8 |
| pfu_aug2.0_259.1_30521.t1 | 9 | 8 | Ank_3 | 706 | 756 | 1.8e-28 | 95.7 | 0.0052 | 7.8 | 7.0 |
| pfu_aug2.0_259.1_30521.t1 | 5 | 5 | Ank_2 | 739 | 779 | 0.0 | 159.4 | 0.00014 | 0.2 | 11.9 |
| pfu_aug2.0_259.1_30521.t1 | 9 | 9 | Ank_4 | 743 | 770 | 4.0e-38 | 129.1 | 0.0045 | 6.6 | 7.3 |
| pfu_aug2.0_259.1_30521.t1 | 8 | 8 | Ank_5 | 745 | 769 | 3.09995e-41 | 138.4 | 2.9e-05 | 0.042 | 14.1 |
| pfu_aug2.0_259.1_30521.t1 | 9 | 9 | Ank_3 | 763 | 783 | 1.8e-28 | 95.7 | 7.5 | 11000.0 | -2.7 |
| pfu_aug2.0_259.1_30521.t1 | 2 | 2 | zf-C3HC4_3 | 813 | 854 | 1.9e-08 | 33.8 | 1.3e-11 | 1.9e-08 | 33.8 |
| pfu_aug2.0_259.1_30521.t1 | 3 | 2 | ZZ | 814 | 820 | 5.1e-08 | 32.3 | 2.8 | 4200.0 | -2.7 |
| pfu_aug2.0_259.1_30521.t1 | 3 | 3 | ZZ | 830 | 840 | 5.1e-08 | 32.3 | 10.0 | 15000.0 | -7.0 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_259.1_30521.t1 | gi|704580488|ref|XP_010188300.1| | PREDICTED: E3 ubiquitin-protein ligase MIB2 isoform X1 [Mesitornis unicolor] | 0.0 |
| pfu_aug2.0_259.1_30521.t1 | gi|657764366|ref|XP_008316844.1| | PREDICTED: E3 ubiquitin-protein ligase MIB2 [Cynoglossus semilaevis] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_259.1_30521.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_259.1_30521.t1 atgtctgttggtcttcgagtggtacgaggtccagactggaaccttggcaacaaagatcaaggtgaaggtcacgtaggaac cgttgtcaaggacaacggcaatgagacattccaagtcgtctgggatatgggcgagcagacgacatgtcgaggcgggaaag atgggaagagtgatcttatcattcttgataacgctccggcaggcgtgaaacacctatctgttgcatgtgaggaatgtggt aaaggtaccattataggtataagatggcagtgtaattcctgcaatgatgtcagcctctgtaccccgtgttatatgacgga caagcatgaggtgtctcatacgtttaagaggatcgacaaacctcacgcatcaagtgtcaatgtccctaagcgggctggca gtaagaagataaaagcagcagggatcttcccaggagccaccgtcatgagaggaactgactgggagtatagtactcaagac ggtggcaacggacagaaagggaaggttgaagacgttcgaaacttcggatcagttgcaggcgggagaaatgcagttcgcgt gcgttgggataaaactggagaagcaaatgtttatcgtgtgggttgtaaagggaaagtggacttgaaatgtgtcagtgagg gaagtggtacctactactacaaagatcatctacctgtcctaggtaaatcagggtcttcaggcagcccaaatgcgtcacct cgatcaccggtaggcagagcggcaggcggagacaccttgctgcagattggtgataaatgtgtcgtggacatgccggagga ggccctgaaagaggtgcagagaggtcacggaggctggagcatcagaatgtctgagtgcatcggagaggttggaacaataa agggatttgttggtgattctgccattgaggtacaatacgacgataggagctaccagttctacgccggtgcagttagcaag gtgtacccaatccgtgttggagacgttgtaagagtgggtaaagatgaaaagaaagccatattattgcagaagaaccacgg tggatggaatgcggacatgaaacaggctttaggattggtcggtaaagtagtaaagatagattccgatggtgatgtggctg ttgcctttggtaaccacgcttgggtattgaaccccgccctcctaaccccggctcccggagaaactccagctcaactgtca ggggaggtggacttctccaaatccacgagcgaagaccccagagaagagcttggtgataaccttggcaggctgatggcgca tctcttactgcttggggcattggaaagacaaacaataggtccggagcaaatggtcgtggcttcagcaaagggagatcttg aaggcgttcagatgtgcttaaggaggaacaaagatctggtcaactgcacattcaaagacataacgccgctaatagttgct tgtcatgagggcaatgaagatgtagttaagctgctgcttctgaatggggcaaatgtcaacgctacaaatgaaaaaggaac aacggctctactagctgcactttccgggaaagaagaagacattgctgttttgttgataaaaaataaagctaatgtacata tcaccgacgccaatcagcgatcacctgcacacgctgctgcttataatgggctctgtcctgtgttaaagatcatattagaa gctggtgccaacaccaatgcacaggacagcgttggtgacacaccccttcacgacgcaatagagaaaagaagtgaccgtgc agtggctattattttgtcgcatccaaaaattgacctgaaactaaccaataaaaaaggatttaatcctctgatttgggcgg cattcaagggacatgactttgccgtggagagaatagttgggaaagcccctcatctggtcgatatccagaaagaagacaaa tttactgcccttcatgttgctgctattaataaccacttagagatagccagtattttgttacttaagggcaaagcgaaggt agatctacgtaacaccaatgctatgacaccctgtcatctggcggcgtacgaaggccacgctgagatggtcaaagtacttg tcgagaatggtgcagatatacatatgaaagacggcgatggagatacagttttccactgtgctatgcggataaaacagcga caggaaggcttgtttttgcaactagttggacttacagttaataacagagaattagaaaatgagaaattcaagatggttct gatgctacttgagaaaggagcaaatttcaaagcaacaaataataggggacagaatcctcttcaagtttgttccagtgaca ggctgaagaacgctgtagttgagataatcaagaaaaggcaaatgactccacaacagaaagcagccagtgatatggcacat gctatgggggaattgttccaagaacttctcgttctgccgtgtgcagtatgcaaggaaaatgtggctaatgctaagtttct accctgtaaacataaggtcacgtgccgtggatgctgcttccgcgtgaacaggtgtccactatgtcatcaacccgtagacg aacgctgtgatacacaggggcgaagaatcatccaagagccatgccaagtacagtga |
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Protein
| Protein ID | pfu_aug2.0_259.1_30521.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_259.1_30521.t1 MSVGLRVVRGPDWNLGNKDQGEGHVGTVVKDNGNETFQVVWDMGEQTTCRGGKDGKSDLIILDNAPAGVKHLSVACEECG KGTIIGIRWQCNSCNDVSLCTPCYMTDKHEVSHTFKRIDKPHASSVNVPKRAGSKKIKAAGIFPGATVMRGTDWEYSTQD GGNGQKGKVEDVRNFGSVAGGRNAVRVRWDKTGEANVYRVGCKGKVDLKCVSEGSGTYYYKDHLPVLGKSGSSGSPNASP RSPVGRAAGGDTLLQIGDKCVVDMPEEALKEVQRGHGGWSIRMSECIGEVGTIKGFVGDSAIEVQYDDRSYQFYAGAVSK VYPIRVGDVVRVGKDEKKAILLQKNHGGWNADMKQALGLVGKVVKIDSDGDVAVAFGNHAWVLNPALLTPAPGETPAQLS GEVDFSKSTSEDPREELGDNLGRLMAHLLLLGALERQTIGPEQMVVASAKGDLEGVQMCLRRNKDLVNCTFKDITPLIVA CHEGNEDVVKLLLLNGANVNATNEKGTTALLAALSGKEEDIAVLLIKNKANVHITDANQRSPAHAAAYNGLCPVLKIILE AGANTNAQDSVGDTPLHDAIEKRSDRAVAIILSHPKIDLKLTNKKGFNPLIWAAFKGHDFAVERIVGKAPHLVDIQKEDK FTALHVAAINNHLEIASILLLKGKAKVDLRNTNAMTPCHLAAYEGHAEMVKVLVENGADIHMKDGDGDTVFHCAMRIKQR QEGLFLQLVGLTVNNRELENEKFKMVLMLLEKGANFKATNNRGQNPLQVCSSDRLKNAVVEIIKKRQMTPQQKAASDMAH AMGELFQELLVLPCAVCKENVANAKFLPCKHKVTCRGCCFRVNRCPLCHQPVDERCDTQGRRIIQEPCQVQ |
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