Gene
| Gene Model ID | pfu_aug2.0_259.1_30527 |
|---|---|
| Locus | scaffold259.1 : 313525 ... 327382 : - |
| To GenomeBrowser | scaffold259.1:313525..327382 |
| Genes list of scaffold | scaffold259.1 |
| Synonym | pfu_aug1.0_17710.1_39985 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_259.1_30527.t1 | 3 | 1 | LIM | 261 | 316 | 1.8e-32 | 111.1 | 1.5e-17 | 2.2e-13 | 50.0 |
| pfu_aug2.0_259.1_30527.t1 | 3 | 2 | LIM | 321 | 377 | 1.8e-32 | 111.1 | 4.3e-15 | 6.4e-11 | 42.1 |
| pfu_aug2.0_259.1_30527.t1 | 3 | 3 | LIM | 381 | 445 | 1.8e-32 | 111.1 | 1.7e-11 | 2.6e-07 | 30.6 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_259.1_30527.t1 | gi|157116661|ref|XP_001652822.1| | AAEL007704-PA [Aedes aegypti] | 0.0 |
| pfu_aug2.0_259.1_30527.t1 | gi|585645480|ref|XP_006811566.1| | PREDICTED: lipoma-preferred partner homolog isoform X5 [Saccoglossus kowalevskii] | 0.0 |
| pfu_aug2.0_259.1_30527.t1 | gi|585645476|ref|XP_006811565.1| | PREDICTED: lipoma-preferred partner homolog isoform X4 [Saccoglossus kowalevskii] | 0.0 |
| pfu_aug2.0_259.1_30527.t1 | gi|585645468|ref|XP_002730765.2| | PREDICTED: lipoma-preferred partner homolog isoform X1 [Saccoglossus kowalevskii] | 0.0 |
| pfu_aug2.0_259.1_30527.t1 | gi|585645472|ref|XP_006811564.1| | PREDICTED: lipoma-preferred partner homolog isoform X3 [Saccoglossus kowalevskii] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_259.1_30527.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_259.1_30527.t1 atgtacaatacagatcattacagcggagacagacagtcaccttacatcagaaacgaatctccagtaggtggcagcaccta catccagcaagcaggtggctccacctacaaccagtcaacaggtggcagcacctacaaccaacctggaaactatgccaatc tgtcgtctattcagtctgtatattcctcgtctgggccaacatctcaggctgactcaannnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnccatttatgcaagacctgtcaagataacaaacagacgttccc ctgagacagtgagttatggccacagtacgactcctgatgttccacccggctacgttcggcaaggaatgggggagcatagg ctatatgaaacagacagacggacagacatacaccagcctgataactatggcagaacacagagcacaagttccacaggatt ctcacctggatatgattatgatgacagacctaagcccgggcctcaggttccccgggcagagtttatccaacatcagcagt tgcccatggctgattatgtccagccgctaggcccaggatcgggacaagaaaagtcgggcaaggaagcagaagtagacgca ctgaccagccttctaatgcagaatatggagtcttctaacgaacctgacttttttggtatttgtgtgaaatgtggaaagaa agtaatcggagaaaataacggatgtacagcaaacggccagatttatcatatcgcctgctttgtgtgcgttagttgtggta ctttactgagagggaagtcattctattcgatggacaacaaaccttactgtgaaccatgctatattaataccttggagaga tgttcagtctgctctaagccaatcacagacaggctgctgagagctaccgggaagccgtaccatcctgagtgttttacttg tgtcgtatgtggtatgagcttggatggaattcccttcactgtagatgccactaatcagatccactgtattgattgtttcc ataagaaatttgccccacgatgctgtgtatgccagcagcccatcatgccagagaaagggatggaagagacagtaagagtt gtggcccttgacaagagcttccatatacaatgctacagatgtgaggactgttccatgttattatcatccgaggcagaagg tagaggctgttatcccttagacgactccatcctctgtaaaaactgtaatgccaagagaatacaagccatgtcctcaaaaa tggccactgagctctga |
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Protein
| Protein ID | pfu_aug2.0_259.1_30527.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_259.1_30527.t1 MYNTDHYSGDRQSPYIRNESPVGGSTYIQQAGGSTYNQSTGGSTYNQPGNYANLSSIQSVYSSSGPTSQADSXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIYARPVKITNRRSPETVSYGHSTTPDVPPGYVRQGMGEHR LYETDRRTDIHQPDNYGRTQSTSSTGFSPGYDYDDRPKPGPQVPRAEFIQHQQLPMADYVQPLGPGSGQEKSGKEAEVDA LTSLLMQNMESSNEPDFFGICVKCGKKVIGENNGCTANGQIYHIACFVCVSCGTLLRGKSFYSMDNKPYCEPCYINTLER CSVCSKPITDRLLRATGKPYHPECFTCVVCGMSLDGIPFTVDATNQIHCIDCFHKKFAPRCCVCQQPIMPEKGMEETVRV VALDKSFHIQCYRCEDCSMLLSSEAEGRGCYPLDDSILCKNCNAKRIQAMSSKMATEL |
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