Gene
| Gene Model ID | pfu_aug2.0_259.1_30529 |
|---|---|
| Locus | scaffold259.1 : 364313 ... 392480 : - |
| To GenomeBrowser | scaffold259.1:364313..392480 |
| Genes list of scaffold | scaffold259.1 |
| Synonym | pfu_aug1.0_5945.1_16797 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_259.1_30529.t1 | 2 | 1 | Thyroglobulin_1 | 93 | 145 | 7.8e-23 | 79.6 | 4.3e-17 | 1.6e-13 | 49.7 |
| pfu_aug2.0_259.1_30529.t1 | 2 | 2 | Thyroglobulin_1 | 161 | 207 | 7.8e-23 | 79.6 | 1.7e-12 | 6.1e-09 | 35.0 |
| pfu_aug2.0_259.1_30529.t1 | 1 | 1 | Syndecan | 321 | 381 | 1.0e-28 | 98.7 | 4.3e-32 | 1.6e-28 | 98.1 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_259.1_30529.t1 | gi|676484341|ref|XP_009063315.1| | hypothetical protein LOTGIDRAFT_235646 [Lottia gigantea] | 0.0 |
| pfu_aug2.0_259.1_30529.t1 | gi|524886125|ref|XP_005099661.1| | PREDICTED: uncharacterized protein LOC101851738, partial [Aplysia californica] | 2.0e-27 |
| pfu_aug2.0_259.1_30529.t1 | gi|241304189|ref|XP_002407594.1| | secreted protein, putative [Ixodes scapularis] | 2.0e-22 |
| pfu_aug2.0_259.1_30529.t1 | gi|662189703|ref|XP_008467590.1| | PREDICTED: syndecan-like [Diaphorina citri] | 7.0e-22 |
| pfu_aug2.0_259.1_30529.t1 | gi|386768389|ref|NP_001246447.1| | syndecan, isoform G [Drosophila melanogaster] | 9.0e-22 |
Transcript
| Transcript ID | pfu_aug2.0_259.1_30529.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_259.1_30529.t1 atgtttatgaagttgctgatattaggtctctccttgctcgttttgagtcgggagagccagggaataacttacaaggaagg aagaaggctcaatagcaacgctttcgatacagaggcaggaagtggggatcactctacagccttagtaaccgatgatgagg atttaacagaatttggatccggagacggctcgggatcagggtcgtcggatgatgtaacaacgtcagcacctcacaccacc aaatctttaacaccatgtgaacagctgagactatctgcccagaatgtctccaaagatatttaccctaaatgtacagatac cggagagtttcagagagtgcagtgtcacattaacctgaaagagtgttggtgtgtggacaagactggcacagagatcacag ggtcaaggatgagacagccaaaaatgccagattgtatgactggatctggtttgaagccatgtgtcttccagcttttgaga tcaaaataccaaaccatgttaggtaaatttgaaccaagatgtactttcgagggagactttgagaaaatacagtgttttgg ctcagcttgttggtgtgtagacgaagagggaatagagcagtggaatactaaagtttacaagcctgccgtcccatcatgta aagaaataacaccaaaaccaatccctgagaccaaagcaccagagacggaggctcccgttagagttacagaattaccatac ataccgatcgacaagacgaaagtgcctcatcatcatgatcataaaccagatagaaacaagcctttcattccaattgatga agaagatgacactaaagatgataaaaatgatgacgttattgacaaagttgatcctggtagagaagacaatactcccgatg atgataataatagtgatgacatagatacacaagtaaacggaccagcgggccagaaatcatccaaggatcctattgtatat ataatgtcacaaccagggttattagcagctgttatcggtggagcagtcgtgggtttactatgcgccatcttacttgttat gttcatagtatacagaatgcgcaaaaaagatgaaggaagttacccactagaagaacaaaaatacacgaactattcataca tgaaggcaccagacaaagaattttacgcataa |
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Protein
| Protein ID | pfu_aug2.0_259.1_30529.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_259.1_30529.t1 MFMKLLILGLSLLVLSRESQGITYKEGRRLNSNAFDTEAGSGDHSTALVTDDEDLTEFGSGDGSGSGSSDDVTTSAPHTT KSLTPCEQLRLSAQNVSKDIYPKCTDTGEFQRVQCHINLKECWCVDKTGTEITGSRMRQPKMPDCMTGSGLKPCVFQLLR SKYQTMLGKFEPRCTFEGDFEKIQCFGSACWCVDEEGIEQWNTKVYKPAVPSCKEITPKPIPETKAPETEAPVRVTELPY IPIDKTKVPHHHDHKPDRNKPFIPIDEEDDTKDDKNDDVIDKVDPGREDNTPDDDNNSDDIDTQVNGPAGQKSSKDPIVY IMSQPGLLAAVIGGAVVGLLCAILLVMFIVYRMRKKDEGSYPLEEQKYTNYSYMKAPDKEFYA |
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