Gene
| Gene Model ID | pfu_aug2.0_2591.1_05593 |
|---|---|
| Locus | scaffold2591.1 : 7949 ... 19155 : - |
| To GenomeBrowser | scaffold2591.1:7949..19155 |
| Genes list of scaffold | scaffold2591.1 |
| Synonym | pfu_aug1.0_1262.1_29647 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| e3 ubiquitin-protein ligase march5 | GO:0004842 GO:0005741 GO:0005783 GO:0008270 GO:0044425 GO:0051865 GO:0090140 GO:0090344 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_2591.1_05593.t1 | 1 | 1 | RINGv | 8 | 62 | 4.8e-14 | 52.1 | 5.8e-17 | 8.6e-14 | 51.3 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_2591.1_05593.t1 | gi|524866148|ref|XP_005089898.1| | PREDICTED: E3 ubiquitin-protein ligase MARCH5-like [Aplysia californica] | 0.0 |
| pfu_aug2.0_2591.1_05593.t1 | gi|585703754|ref|XP_006823321.1| | PREDICTED: E3 ubiquitin-protein ligase MARCH5-like [Saccoglossus kowalevskii] | 0.0 |
| pfu_aug2.0_2591.1_05593.t1 | gi|676450350|ref|XP_009052350.1| | hypothetical protein LOTGIDRAFT_214381 [Lottia gigantea] | 0.0 |
| pfu_aug2.0_2591.1_05593.t1 | gi|390362223|ref|XP_790244.3| | PREDICTED: E3 ubiquitin-protein ligase MARCH5 isoform X1 [Strongylocentrotus purpuratus] | 0.0 |
| pfu_aug2.0_2591.1_05593.t1 | gi|637332783|ref|XP_008114975.1| | PREDICTED: E3 ubiquitin-protein ligase MARCH5 isoform X2 [Anolis carolinensis] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_2591.1_05593.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_2591.1_05593.t1 atgtcggataatataagatcttgttgggtatgctttgctacagaggaagatgactctgaggctgagtgggtgtcaccatg tcgatgtaaggggacgtcaggatgggtacatcagacctgtctccagagatggatagacgagaaacagaaaggagatagct cagctgctgtggcatgccctcagtgtaacacaggatacatcatagatttcccttcttatggtcttatcatgcgtacaata aactctgtggacacgttgatatatagagcttgtcccttcggagcaggtctgatattttgtggaactgtttattggacagc attttcctatggctgtgtggtggtcacacaggtgtgtggttctgaggaggggcttaacaaactacaggacatggacccat gggtgatgttagttagcatgcctatgatcccggtggtacttattctgggccgcatgatacgatgggaggactacatactc agaatctggagaaaacattcctctaaaatacctctcattaattatatgtttccttatgatgaagatgatgatgatgagga agatgaggaagaagagatggagatagaagtggatgaagatgatgaactcccagaattagttgacgtacgtttcaaaagca tcaaacagcaatattgtccctga |
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Protein
| Protein ID | pfu_aug2.0_2591.1_05593.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_2591.1_05593.t1 MSDNIRSCWVCFATEEDDSEAEWVSPCRCKGTSGWVHQTCLQRWIDEKQKGDSSAAVACPQCNTGYIIDFPSYGLIMRTI NSVDTLIYRACPFGAGLIFCGTVYWTAFSYGCVVVTQVCGSEEGLNKLQDMDPWVMLVSMPMIPVVLILGRMIRWEDYIL RIWRKHSSKIPLINYMFPYDEDDDDEEDEEEEMEIEVDEDDELPELVDVRFKSIKQQYCP |
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