Gene
| Gene Model ID | pfu_aug2.0_2595.1_18868 |
|---|---|
| Locus | scaffold2595.1 : 9718 ... 20055 : - |
| To GenomeBrowser | scaffold2595.1:9718..20055 |
| Genes list of scaffold | scaffold2595.1 |
| Synonym | pfu_aug1.0_1042.1_65757 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_2595.1_18868.t1 | 2 | 1 | zf-RING_2 | 57 | 101 | 6.3e-09 | 35.5 | 4.2e-12 | 6.3e-09 | 35.5 |
| pfu_aug2.0_2595.1_18868.t1 | 2 | 1 | zf-C3HC4 | 58 | 100 | 6.4e-08 | 32.1 | 4.3e-11 | 6.4e-08 | 32.1 |
| pfu_aug2.0_2595.1_18868.t1 | 2 | 1 | zf-C3HC4_2 | 58 | 100 | 1.4e-07 | 31.3 | 9.7e-11 | 1.4e-07 | 31.3 |
| pfu_aug2.0_2595.1_18868.t1 | 2 | 1 | zf-C3HC4_4 | 58 | 100 | 1.6e-07 | 31.0 | 1.1e-10 | 1.6e-07 | 31.0 |
| pfu_aug2.0_2595.1_18868.t1 | 2 | 1 | zf-RING_UBOX | 58 | 98 | 6.3e-06 | 25.8 | 4.2e-09 | 6.3e-06 | 25.8 |
| pfu_aug2.0_2595.1_18868.t1 | 2 | 2 | zf-C3HC4 | 132 | 163 | 6.4e-08 | 32.1 | 1.3 | 1900.0 | -1.4 |
| pfu_aug2.0_2595.1_18868.t1 | 2 | 2 | zf-RING_2 | 137 | 163 | 6.3e-09 | 35.5 | 0.95 | 1400.0 | -0.8 |
| pfu_aug2.0_2595.1_18868.t1 | 2 | 2 | zf-C3HC4_2 | 142 | 162 | 1.4e-07 | 31.3 | 0.38 | 570.0 | 0.6 |
| pfu_aug2.0_2595.1_18868.t1 | 2 | 2 | zf-C3HC4_4 | 146 | 167 | 1.6e-07 | 31.0 | 7.4 | 11000.0 | -3.7 |
| pfu_aug2.0_2595.1_18868.t1 | 2 | 2 | zf-RING_UBOX | 147 | 157 | 6.3e-06 | 25.8 | 9.4 | 14000.0 | -4.1 |
| pfu_aug2.0_2595.1_18868.t1 | 4 | 1 | NHL | 311 | 324 | 6.5e-09 | 35.3 | 1.1 | 1600.0 | -0.7 |
| pfu_aug2.0_2595.1_18868.t1 | 4 | 2 | NHL | 368 | 394 | 6.5e-09 | 35.3 | 1.4e-06 | 0.0021 | 17.9 |
| pfu_aug2.0_2595.1_18868.t1 | 4 | 3 | NHL | 429 | 443 | 6.5e-09 | 35.3 | 0.35 | 530.0 | 0.8 |
| pfu_aug2.0_2595.1_18868.t1 | 4 | 4 | NHL | 476 | 491 | 6.5e-09 | 35.3 | 0.00026 | 0.39 | 10.7 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_2595.1_18868.t1 | gi|328709507|ref|XP_003243980.1| | PREDICTED: brain tumor protein [Acyrthosiphon pisum] | 4.0e-09 |
Transcript
| Transcript ID | pfu_aug2.0_2595.1_18868.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_2595.1_18868.t1 atgaggaaatcagaagcagaaggcatacaaaatcaggataaaacagaaaccaaagcagacaaacaaaaaactccaccaca tgaaaagaagcggactcccgatatgagagtgagaccaggtgcccaggaagactgggcctataaactgtcttcttacaaaa tgtcggatatatgttccgtgtgtcaagatgtttttgacaaccccaagtttttacattgtggacatacattctgttgtaaa tgcatagacgccatgctgggaacaacgaaaggaccatacaaaatcaagtgtccactttgtcgtaaagtcacaaactgccg gaaacgagggacaggtgatttaatggacaacttctttgtcccagacagaatccattctacgaggatcttaacatgcacag aatgtagtggtatctcagaacttacaacttgtgatcgttgtcaaatactattgtgtgaacaatgcatgtttactcatatg aaaacaaagtgtggtaaggagtggcaagatggcgggttagcctgtattgatacaaacagagaggacgaggaaaatgcgga tgaagatgatgttgggctagaagagcgacttatgtccgagatgattcagacgaagtactatttcgagcttgagcgtagaa tagtgattccgaatgattataacgattcaaatttgaatttaaacctgtcttcacttgcttgtttgaacgagaatcagatc ataacagcgccgaatcgggaatcttttgtgtttatattcaatgataaaggtgaagaactattgagagattttttaccgat aaggtatggggtcattggcatttgttcaggtattgagggataccctttacttatacagaaaaatcatttctctgtgtata aatattgttacgggagcatcgaaacaatgtttagtacgccatcgatttcaccaagagcgatttccagctttaacaatggc aggatagttattgtgggaatgaaactgattcacacggaacggggtgccgaaagtacgtctgatgcaagcttttgtatatt tgaatataatggcgctgttgtcgcagacctctccacagaacacccagattatttcatagaacacccgacaagcgtctgtg tgaacatgaccaacaatgacttcttcgttggcgataagatgaagaagcaagtcctgtgcttcaaagaagacggaagttac gaatcatcatacaaacgatccgatttaccggatagaattctgggtatccctgtgccaacagccttgataaataacagtac aatgtttcctttgtccctggcgtactgtacaacaaacgatctactatacgcttcctttcttacagcagtggagcgaggta tttatgtgctttcgtcttctttggatctactaggacttttcagttctgccgaaagtgttggaattcctgcgggattatct tgtgacgacagagggagactctatgttggagacggaacggacggaattatcagggtttataaattgtcagtgtatctaaa cagagtctga |
|
Protein
| Protein ID | pfu_aug2.0_2595.1_18868.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_2595.1_18868.t1 MRKSEAEGIQNQDKTETKADKQKTPPHEKKRTPDMRVRPGAQEDWAYKLSSYKMSDICSVCQDVFDNPKFLHCGHTFCCK CIDAMLGTTKGPYKIKCPLCRKVTNCRKRGTGDLMDNFFVPDRIHSTRILTCTECSGISELTTCDRCQILLCEQCMFTHM KTKCGKEWQDGGLACIDTNREDEENADEDDVGLEERLMSEMIQTKYYFELERRIVIPNDYNDSNLNLNLSSLACLNENQI ITAPNRESFVFIFNDKGEELLRDFLPIRYGVIGICSGIEGYPLLIQKNHFSVYKYCYGSIETMFSTPSISPRAISSFNNG RIVIVGMKLIHTERGAESTSDASFCIFEYNGAVVADLSTEHPDYFIEHPTSVCVNMTNNDFFVGDKMKKQVLCFKEDGSY ESSYKRSDLPDRILGIPVPTALINNSTMFPLSLAYCTTNDLLYASFLTAVERGIYVLSSSLDLLGLFSSAESVGIPAGLS CDDRGRLYVGDGTDGIIRVYKLSVYLNRV |
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