Gene
| Gene Model ID | pfu_aug2.0_26.1_20076 |
|---|---|
| Locus | scaffold26.1 : 204035 ... 218945 : - |
| To GenomeBrowser | scaffold26.1:204035..218945 |
| Genes list of scaffold | scaffold26.1 |
| Synonym | NA |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| ras-related protein rab-22a | GO:0003924 GO:0005525 GO:0005769 GO:0005886 GO:0006886 GO:0006897 GO:0007032 GO:0008152 GO:0015629 GO:0019003 GO:0032482 GO:0045335 GO:0070062 GO:0097494 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_26.1_20076.t1 | 1 | 1 | Arf | 4 | 126 | 1.0e-12 | 47.6 | 1.3e-15 | 1.2e-12 | 47.4 |
| pfu_aug2.0_26.1_20076.t1 | 1 | 1 | Ras | 7 | 166 | 0.0 | 190.5 | 0.0 | 0.0 | 190.3 |
| pfu_aug2.0_26.1_20076.t1 | 1 | 1 | Miro | 7 | 121 | 6.0e-20 | 71.9 | 9.0e-23 | 8.4e-20 | 71.4 |
| pfu_aug2.0_26.1_20076.t1 | 1 | 1 | Gtr1_RagA | 7 | 124 | 4.1e-06 | 26.1 | 5.3e-09 | 4.9e-06 | 25.8 |
| pfu_aug2.0_26.1_20076.t1 | 1 | 1 | GTP_EFTU | 32 | 167 | 8.8e-07 | 28.5 | 1.5e-09 | 1.4e-06 | 27.8 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_26.1_20076.t1 | gi|676494538|ref|XP_009066595.1| | hypothetical protein LOTGIDRAFT_229819 [Lottia gigantea] | 0.0 |
| pfu_aug2.0_26.1_20076.t1 | gi|524915496|ref|XP_005112546.1| | PREDICTED: ras-related protein Rab-22A-like [Aplysia californica] | 0.0 |
| pfu_aug2.0_26.1_20076.t1 | gi|115612989|ref|XP_790094.2| | PREDICTED: ras-related protein Rab-22A [Strongylocentrotus purpuratus] | 0.0 |
| pfu_aug2.0_26.1_20076.t1 | gi|260797885|ref|XP_002593931.1| | hypothetical protein BRAFLDRAFT_283834 [Branchiostoma floridae] | 0.0 |
| pfu_aug2.0_26.1_20076.t1 | gi|585672586|ref|XP_006818266.1| | PREDICTED: ras-related protein Rab-22A-like [Saccoglossus kowalevskii] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_26.1_20076.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_26.1_20076.t1 atgtcagtgagagagataaaactttgtttactgggtgaatcaggtgtaggaaagtccagtatagttttaagatttgtgaa tgatacattcaaaccatctctagagagcaccattggggcttcatttatgaccaagaggatagaagtggatggactgcatt acatattccagatctgggacacagccgggcaagaaaagtatcgggcgttggcacctatgtactacagaggagcctcggca gcaattatcgtgtatgacgtaactagagaggcaacattccgcaccgtaaaagagtggatccgagagctcaagaagaactc taccacagatatggttattgccatagcagggaataaatgtgatctcactgacctccgggaggtccgagctaaagatgctg aggactatgccagagaaataggtgctatatttatagagacaagtgcccttaccgctataaatgttcctaagttattccaa agtatagcgaaaaatttaccagcggatgacggcatggtgcgtccaggcagtactataaatctcagggcaaatacgtcaaa ttctcaatcagccaagaaagggggctgttgcggtagacagaagacggattcctag |
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Protein
| Protein ID | pfu_aug2.0_26.1_20076.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_26.1_20076.t1 MSVREIKLCLLGESGVGKSSIVLRFVNDTFKPSLESTIGASFMTKRIEVDGLHYIFQIWDTAGQEKYRALAPMYYRGASA AIIVYDVTREATFRTVKEWIRELKKNSTTDMVIAIAGNKCDLTDLREVRAKDAEDYAREIGAIFIETSALTAINVPKLFQ SIAKNLPADDGMVRPGSTINLRANTSNSQSAKKGGCCGRQKTDS |
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