Gene
| Gene Model ID | pfu_aug2.0_26.1_20084 |
|---|---|
| Locus | scaffold26.1 : 652133 ... 673526 : + |
| To GenomeBrowser | scaffold26.1:652133..673526 |
| Genes list of scaffold | scaffold26.1 |
| Synonym | pfu_aug1.0_4090.1_37797 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_26.1_20084.t2 | 2 | 1 | Transglut_N | 20 | 139 | 1.4e-33 | 115.4 | 1.5e-36 | 5.6e-33 | 113.4 |
| pfu_aug2.0_26.1_20084.t2 | 2 | 1 | Transglut_core | 232 | 307 | 1.3e-11 | 44.7 | 1.0e-14 | 3.8e-11 | 43.1 |
| pfu_aug2.0_26.1_20084.t2 | 2 | 2 | Transglut_core | 388 | 415 | 1.3e-11 | 44.7 | 0.93 | 3500.0 | -1.8 |
| pfu_aug2.0_26.1_20084.t2 | 2 | 2 | Transglut_N | 432 | 448 | 1.4e-33 | 115.4 | 0.8 | 3000.0 | -1.8 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_26.1_20084.t2 | gi|564229630|ref|XP_006259256.1| | PREDICTED: protein-glutamine gamma-glutamyltransferase 2 [Alligator mississippiensis] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_26.1_20084.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_26.1_20084.t1 atggccgcaatttttcatttctctgtagacaatgatgtggatgagccatataaagatctgaaggttgaagacgtcgattt actgatcgatgaaaactccaaagatcaccacactgacaaatatgacctaaccgactctagtgctaaacttgttctacggc gaggatctccgttcaatgtgaaaatccgcttttcaaggaaagtcaatttacaggaggacaatttgagattcgcattaact gcaggtgactatccacaacacggagatgggtctcttgtccatttttctctttccgaaagggatcctcgtggaaaatggaa cgctgaaatgaaagaggagaaagataatgaggtaaaagtgcagattacaattccagccgactgtcttgtatgcaaatggc gctttaaaatcgaaatattggagcagaaagacggtgaacccatagtgcatgttaataagaagatattccctatggagatc tatattctattcaacccatggaacaaagcggatacggtgtatcttgaagacgagagtttgcgaaaggagtatgtactcaa tgatgaaggagctatctgggtcgggaattacacaaatttcagaacatggttctttggacagtgtaattctagtgaaaatc agagaaatataaacgaatactccaaacttattcacattgatataaatgctttatctgttgtatacctagtgtgcagagcc atagggataccgtgtagaagcgtcacaaacttttcctctgctcatgacacggatggatctataaccattgacagatattt cgatcttgagggcaataaagagggcggcgattcaacatggaatttccatgtttggaacgaagtatggatgagaagacccg acatatctaaagcaaattatgatggttggcaagctattgatagtactccacaggaggagagcggtggcacatttcagtgc ggtcctatgccagtagcagcaataaaggaaggcgatgtgtcctacaactttgacggacccttcatatttgctgaagttaa tgcagacattgtgacttgggtgaatggaagagatggacagccttatttttcagacatagacagagtgcgcgtcggaaaag atatcagtacacgggcgccacaggagggtaaagagaataaaagacaagacctaacagataattacaagtacagagaagga actgaaaaagaaaaagacgttgtgttgacagcatttaaagcaggacatacctactctggagaaaattacaagttgtacaa aggtttcataaactcgcaagaaaag |
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| Transcript ID | pfu_aug2.0_26.1_20084.t2 |
| Definition | - |
>pfu_aug2.0_26.1_20084.t2 atggccgcaatttttcatttctctgtagacaatgatgtggatgagccatataaagatctgaaggttgaagacgtcgattt actgatcgatgaaaactccaaagatcaccacactgacaaatatgacctaaccgactctagtgctaaacttgttctacggc gaggatctccgttcaatgtgaaaatccgcttttcaaggaaagtcaatttacaggaggacaatttgagattcgcattaact gcaggtgactatccacaacacggagatgggtctcttgtccatttttctctttccgaaagggatcctcgtggaaaatggaa cgctgaaatgaaagaggagaaagataatgaggtaaaagtgcagattacaattccagccgactgtcttgtatgcaaatggc gctttaaaatcgaaatattggagcagaaagacggtgaacccatagtgcatgttaataagaagatattccctatggagatc tatattctattcaacccatggaacaaagcggatacggtgtatcttgaagacgagagtttgcgaaaggagtatgtactcaa tgatgaaggagctatctgggtcgggaattacacaaatttcagaacatggttctttggacagtgtaattctagtgaaaatc agagaaatataaacgaatactccaaacttattcacattgatataaatgctttatctgttgtatacctagtgtgcagagcc atagggataccgtgtagaagcgtcacaaacttttcctctgctcatgacacggatggatctataaccattgacagatattt cgatcttgagggcaataaagagggcggcgattcaacatggaatttccatgtttggaacgaagtatggatgagaagacccg acatatctaaagcaaattatgatggttggcaagctattgatagtactccacaggaggagagcggtggcacatttcagtgc ggtcctatgccagtagcagcaataaaggaaggcgatgtgtcctacaactttgacggacccttcatatttgctgaagttaa tgcagacattgtgacttgggtgaatggaagagatggacagccttatttttcagacatagacagagtgcgcgtcggaaaag atatcagtacacgggcgccacaggagggtaaagagaataaaagacaagacctaacagataattacaagtacagagaagga actgaaaaagaaaaagacgttgtgttgacagcatttaaagcaggacatacctactctggagaaaattacaagttgtacaa aggtttcataaactcgcaagaaaagaatgtagaggctaaactagatacaccagttgacgcaaaatacggagaagacttta cagtaagtttgactggtataaacaggtcggataaggaacagttgttatactgtactgtctcacttacacctgaaaacagt gctgctgaaagacttaaacgaataaagttcagagatatggaaggatccattccaccaaaaggggaagatggtaaaatcag tcttgaagtagtagtaacagttgacgaatacattgggaggcttcatgatggatgttttatctctgtggcgggagtcatat tcaataacactacaaaacaggcctctcttattgaaaggtcaatcatgctggtcaaaccggaactcaaagtagagattatc gatgatgatgtacagctcaataagcctttctctataggaatgagttttaccaacccactgaatgtcccattgacgcagtg cgaaatcgacattgatgctaagggaattgtcatagaggacccaaaagctatgaagcgaagtcaactcgaaatggtagcat cagagtag |
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Protein
| Protein ID | pfu_aug2.0_26.1_20084.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_26.1_20084.t1 MAAIFHFSVDNDVDEPYKDLKVEDVDLLIDENSKDHHTDKYDLTDSSAKLVLRRGSPFNVKIRFSRKVNLQEDNLRFALT AGDYPQHGDGSLVHFSLSERDPRGKWNAEMKEEKDNEVKVQITIPADCLVCKWRFKIEILEQKDGEPIVHVNKKIFPMEI YILFNPWNKADTVYLEDESLRKEYVLNDEGAIWVGNYTNFRTWFFGQCNSSENQRNINEYSKLIHIDINALSVVYLVCRA IGIPCRSVTNFSSAHDTDGSITIDRYFDLEGNKEGGDSTWNFHVWNEVWMRRPDISKANYDGWQAIDSTPQEESGGTFQC GPMPVAAIKEGDVSYNFDGPFIFAEVNADIVTWVNGRDGQPYFSDIDRVRVGKDISTRAPQEGKENKRQDLTDNYKYREG TEKEKDVVLTAFKAGHTYSGENYKLYKGFINSQEK |
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| Protein ID | pfu_aug2.0_26.1_20084.t2 |
| Definition | - |
>pfu_aug2.0_26.1_20084.t2 MAAIFHFSVDNDVDEPYKDLKVEDVDLLIDENSKDHHTDKYDLTDSSAKLVLRRGSPFNVKIRFSRKVNLQEDNLRFALT AGDYPQHGDGSLVHFSLSERDPRGKWNAEMKEEKDNEVKVQITIPADCLVCKWRFKIEILEQKDGEPIVHVNKKIFPMEI YILFNPWNKADTVYLEDESLRKEYVLNDEGAIWVGNYTNFRTWFFGQCNSSENQRNINEYSKLIHIDINALSVVYLVCRA IGIPCRSVTNFSSAHDTDGSITIDRYFDLEGNKEGGDSTWNFHVWNEVWMRRPDISKANYDGWQAIDSTPQEESGGTFQC GPMPVAAIKEGDVSYNFDGPFIFAEVNADIVTWVNGRDGQPYFSDIDRVRVGKDISTRAPQEGKENKRQDLTDNYKYREG TEKEKDVVLTAFKAGHTYSGENYKLYKGFINSQEKNVEAKLDTPVDAKYGEDFTVSLTGINRSDKEQLLYCTVSLTPENS AAERLKRIKFRDMEGSIPPKGEDGKISLEVVVTVDEYIGRLHDGCFISVAGVIFNNTTKQASLIERSIMLVKPELKVEII DDDVQLNKPFSIGMSFTNPLNVPLTQCEIDIDAKGIVIEDPKAMKRSQLEMVASE |
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