Gene
| Gene Model ID | pfu_aug2.0_2619.1_32254 |
|---|---|
| Locus | scaffold2619.1 : 43780 ... 50735 : - |
| To GenomeBrowser | scaffold2619.1:43780..50735 |
| Genes list of scaffold | scaffold2619.1 |
| Synonym | pfu_aug1.0_9632.1_38938 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_2619.1_32254.t1 | 1 | 1 | C1q | 26 | 141 | 3.5e-18 | 65.8 | 7.3e-22 | 1.1e-17 | 64.2 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_2619.1_32254.t1 | gi|556946042|ref|XP_005986315.1| | PREDICTED: complement C1q-like protein 4 [Latimeria chalumnae] | 4.0e-09 |
| pfu_aug2.0_2619.1_32254.t1 | gi|731215164|ref|XP_010622002.1| | PREDICTED: complement C1q-like protein 4, partial [Fukomys damarensis] | 4.0e-09 |
Transcript
| Transcript ID | pfu_aug2.0_2619.1_32254.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_2619.1_32254.t1 atgatgactctcctatggtgcagtgctgtgtttgtgatagcaattaatgtaaagatggctaatggagtgtccgttgcttt tcacgctagatttagtcaaaacgtgaaaggtctttcgatcaactccacgctgaagtttgacaaggtttatgagaacctgc gcagtggttacgatgactccacaggcttattcacctgtcctgaggacggattctatgtcttccactgggctatgtttagc gctgaaggaaaatatgcttttgctgacctcatggtaaatggacaaatgattgggcgatcacatgtaaatgcaagcagtac tgtaatttaccatctgtatgaagatgaaaaggtgtggatcgagcttcatcatacttgtgttggtaaactcgcactcgagg gttggtctttcttctctggatacaagctctag |
|
Protein
| Protein ID | pfu_aug2.0_2619.1_32254.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_2619.1_32254.t1 MMTLLWCSAVFVIAINVKMANGVSVAFHARFSQNVKGLSINSTLKFDKVYENLRSGYDDSTGLFTCPEDGFYVFHWAMFS AEGKYAFADLMVNGQMIGRSHVNASSTVIYHLYEDEKVWIELHHTCVGKLALEGWSFFSGYKL |
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