Gene
| Gene Model ID | pfu_aug2.0_264.1_13903 |
|---|---|
| Locus | scaffold264.1 : 220240 ... 233523 : - |
| To GenomeBrowser | scaffold264.1:220240..233523 |
| Genes list of scaffold | scaffold264.1 |
| Synonym | pfu_aug1.0_6568.1_31240 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| splicing factor 3b subunit 3 isoform x2 | GO:0000398 GO:0003723 GO:0005515 GO:0005654 GO:0005689 GO:0006461 GO:0030532 GO:0071013 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_264.1_13903.t3 | 1 | 1 | CPSF_A | 102 | 314 | 0.0 | 210.1 | 0.0 | 0.0 | 209.7 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_264.1_13903.t3 | gi|119572189|gb|EAW51804.1| | splicing factor 3b, subunit 3, 130kDa, isoform CRA_b [Homo sapiens] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_264.1_13903.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_264.1_13903.t1 atggatccaacaggtcaattgaatgagtacacagaaagaaaagagatgtcatcggaggtagtgtgcatggcattgggacg tgtaccccagggggagcagaggtcccgtttcctggctgtggggctggctgacaatactgttagaattgtatcccttgatc cttctgattgtttatctcccctgagtatgcaggcgttacccgagcctcctgagtcgctgtgtattgtggagatgggaggg acagaagccaaggaggagacaggggaaacagggtccgtgggaggactcttccttaacattggtttacagccccgtttaca ctatcaaagttttcttgtacaagaaaacttggtcaaagtttttgacgcgaactttgatagtgtaaacgatccaagaaaac tttga |
|
| Transcript ID | pfu_aug2.0_264.1_13903.t2 |
| Definition | - |
>pfu_aug2.0_264.1_13903.t2 atggatccaacaggtcaattgaatgagtacacagaaagaaaagagatgtcatcggaggtagtgtgcatggcattgggacg tgtaccccagggggagcagaggtcccgtttcctggctgtggggctggctgacaatactgttagaattgtatcccttgatc cttctgattgtttatctcccctgagtatgcaggcgttacccgagcctcctgagtcgctgtgtattgtggagatgggaggg acagaagccaaggaggagacaggggaaacagggtccgtgggaggactcttccttaacattggtttacagaatggtgtatt gctgcgtacagtacttgacactgtgactggagatttatcggacaccaggaccagatatcttggtttacgacctgtaaaac tgtttagaatcaccatgcagggatcggaggcagtactagcgatgtccagcagatcatggctcagctatacgtaccagaac cgattccatctcactccactgtcatatgaatcgttagagtatgcttcaggttttgcatcagagcagtgtcctgagggaat agtagccatctcaacaaacactctgaggtcagaaatggtagaaatggtgagtgctgaggaaagagaaatggcggcagaaa tggctgctgcatttctgaacgaagaattaccagaaagcacatttggagctcctaaggcggggcctggtatgtgggcgtcg ctgatacgtataatcaaccccatcacaggccaaactgtggagaaaatacagatggaacaaaacgaggctgttcatagtat tgcgttgctgaaatttgccagtcgaggtgatgaccagtttgtgttactaggtgtatccaaggacttaaccctgaatccaa ggacactgagtggggggtttctatatttatatcagttaaaagacggtggtgaaaaactagaattacttcataaaactcct gttgaggaagtgccaggggccatcacttcattccaaggaagagcattgataggaatcggaaaatatctgcgcatttatga tatcggaaagaagaaaatgctgagaaaatgtgaaaataagcatgtgcctaattttgttgtgggcatccatactataggga acagaatcatagtgtccgacattcaggacagtttccattttgtacgttataaacgacaagagaatcagctgattatattc gctgacgacacaaatccacggtggatcacagcctcggccatgctggattataatacagtctgtggggcggacaagttcgg aaatctcactgtgattcgacttccgactgatgtcagtgatgaagttgatgaagatccgactggaaacaaagcattatggg ataggggtgtgcttaacggagcatcacaaaagctcacagacttgatgtctgtgagctgtataatttga |
|
| Transcript ID | pfu_aug2.0_264.1_13903.t3 |
| Definition | - |
>pfu_aug2.0_264.1_13903.t3 atgcagggatcggaggcagtactagcgatgtccagcagatcatggctcagctatacgtaccagaaccgattccatctcac tccactgtcatatgaatcgttagagtatgcttcaggttttgcatcagagcagtgtcctgagggaatagtagccatctcaa caaacactctgaggtcagaaatggtagaaatggtgagtgctgaggaaagagaaatggcggcagaaatggctgctgcattt ctgaacgaagaattaccagaaagcacatttggagctcctaaggcggggcctggtatgtgggcgtcgctgatacgtataat caaccccatcacaggccaaactgtggagaaaatacagatggaacaaaacgaggctgttcatagtattgcgttgctgaaat ttgccagtcgaggtgatgaccagtttgtgttactaggtgtatccaaggacttaaccctgaatccaaggacactgagtggg gggtttctatatttatatcagttaaaagacggtggtgaaaaactagaattacttcataaaactcctgttgaggaagtgcc aggggccatcacttcattccaaggaagagcattgataggaatcggaaaatatctgcgcatttatgatatcggaaagaaga aaatgctgagaaaatgtgaaaataagcatgtgcctaattttgttgtgggcatccatactatagggaacagaatcatagtg tccgacattcaggacagtttccattttgtacgttataaacgacaagagaatcagctgattatattcgctgacgacacaaa tccacggtggatcacagcctcggccatgctggattataatacagtctgtggggcggacaagttcggaaatctcactgtga ttcgacttccgactgatgtcagtgatgaagttgatgaagatccgactggaaacaaagcattatgggataggggtgtgctt aacggagcatcacaaaagctcacagacttgatgtctgtgagctgtataatttga |
|
Protein
| Protein ID | pfu_aug2.0_264.1_13903.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_264.1_13903.t1 MDPTGQLNEYTERKEMSSEVVCMALGRVPQGEQRSRFLAVGLADNTVRIVSLDPSDCLSPLSMQALPEPPESLCIVEMGG TEAKEETGETGSVGGLFLNIGLQPRLHYQSFLVQENLVKVFDANFDSVNDPRKL |
|
| Protein ID | pfu_aug2.0_264.1_13903.t2 |
| Definition | - |
>pfu_aug2.0_264.1_13903.t2 MDPTGQLNEYTERKEMSSEVVCMALGRVPQGEQRSRFLAVGLADNTVRIVSLDPSDCLSPLSMQALPEPPESLCIVEMGG TEAKEETGETGSVGGLFLNIGLQNGVLLRTVLDTVTGDLSDTRTRYLGLRPVKLFRITMQGSEAVLAMSSRSWLSYTYQN RFHLTPLSYESLEYASGFASEQCPEGIVAISTNTLRSEMVEMVSAEEREMAAEMAAAFLNEELPESTFGAPKAGPGMWAS LIRIINPITGQTVEKIQMEQNEAVHSIALLKFASRGDDQFVLLGVSKDLTLNPRTLSGGFLYLYQLKDGGEKLELLHKTP VEEVPGAITSFQGRALIGIGKYLRIYDIGKKKMLRKCENKHVPNFVVGIHTIGNRIIVSDIQDSFHFVRYKRQENQLIIF ADDTNPRWITASAMLDYNTVCGADKFGNLTVIRLPTDVSDEVDEDPTGNKALWDRGVLNGASQKLTDLMSVSCII |
|
| Protein ID | pfu_aug2.0_264.1_13903.t3 |
| Definition | - |
>pfu_aug2.0_264.1_13903.t3 MQGSEAVLAMSSRSWLSYTYQNRFHLTPLSYESLEYASGFASEQCPEGIVAISTNTLRSEMVEMVSAEEREMAAEMAAAF LNEELPESTFGAPKAGPGMWASLIRIINPITGQTVEKIQMEQNEAVHSIALLKFASRGDDQFVLLGVSKDLTLNPRTLSG GFLYLYQLKDGGEKLELLHKTPVEEVPGAITSFQGRALIGIGKYLRIYDIGKKKMLRKCENKHVPNFVVGIHTIGNRIIV SDIQDSFHFVRYKRQENQLIIFADDTNPRWITASAMLDYNTVCGADKFGNLTVIRLPTDVSDEVDEDPTGNKALWDRGVL NGASQKLTDLMSVSCII |
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