Gene
| Gene Model ID | pfu_aug2.0_264.1_13904 |
|---|---|
| Locus | scaffold264.1 : 233575 ... 248553 : - |
| To GenomeBrowser | scaffold264.1:233575..248553 |
| Genes list of scaffold | scaffold264.1 |
| Synonym | NA |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| splicing factor 3b subunit 3-like | GO:0000398 GO:0003723 GO:0005689 GO:0071013 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_264.1_13904.t1 | 2 | 1 | MMS1_N | 76 | 191 | 1.19951e-42 | 145.7 | 2.2e-20 | 3.3e-16 | 58.5 |
| pfu_aug2.0_264.1_13904.t1 | 2 | 2 | MMS1_N | 266 | 417 | 1.19951e-42 | 145.7 | 1.5e-28 | 2.2e-24 | 85.5 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_264.1_13904.t1 | gi|665811871|ref|XP_008554423.1| | PREDICTED: splicing factor 3B subunit 3 isoform X2 [Microplitis demolitor] | 0.0 |
| pfu_aug2.0_264.1_13904.t1 | gi|602674161|ref|XP_007442574.1| | PREDICTED: splicing factor 3B subunit 3-like, partial [Python bivittatus] | 0.0 |
| pfu_aug2.0_264.1_13904.t1 | gi|699581639|ref|XP_009863075.1| | PREDICTED: splicing factor 3B subunit 3, partial [Apaloderma vittatum] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_264.1_13904.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_264.1_13904.t1 atgtatctgtataaccttaccctacaaagggccacaggaattacttgtgctgtccatggaaacttctcagggtctaaact acaagaaatcatagtgtcgcgaggaaaaatcattgaactgttccgtcatgatccaaacacagggaaagtttaccctgtat tgtcagtggaagtgctgggaatggtcagagctctgatgccattcaggctcacaggtggaaataaagattacgtagtggtt ggatcagactctggtagaattgttattctggaatatgtccctcagaaaaacacatttgaaaaggtccatcaagagacatt tgggaagagtgggtgtcgaagaatagtaccgggtcaatacctagcagtggatcctaaagggagagctgttatgatcggtg ccgtagagaagcagaagcttgtgtacattatgaacagggatgcccaggctcgtcttacgatctcctcacctctcgaggca cataaagctaacacgttagtctatcacatggtaggagtagatgtaggctttgaaaatcctacgttcgcttgcttggaaat agattatgaggaggcagacactgatcacactggggagggagctaagaatactcaacagctgctgacttactacgagttag atttgggtctaaaccatgtggtaaggaagtactcagaaacactggaggaacatgctaatttcctcgtatcagtgcctgga ggtagtgacggtccgagtggaaatgaccttgatgacccagagagaggcatgatatttgtctgtagtgctactcataaaac aaagtccatgttctttttcttggctcagacagaacaaggcgatattttcaaaatcactttagaaatagatgaagacatgg taacagaaatcatcctaaagtattttgatacggtccctgtagcttccagtatgtgtgttcttaagtctgggtttctcttt gtggcttcagagtttggtaatcattacctgtaccagatagcccagctaggtgatgacgatgatgaacctcgattcagcag tgcctcacagttagaggagggagaacctcatttcttctcgcctcgacctctcaaaaatctggtccaagtcgacgaaatgg acagcctctctcctatcttgtcatgtcagatagctgacttggccaatgaggacacacctcagttatacaccctatgtggg cgtggtcctagatccaccatgaggattctaagacatggtttagagaggctagttgaatgtctagctgaaacagattacaa aggtgttaggtctaacatgaacatgagacagatccgatctaacgaaggctggtccgaggtgtcaccttga |
|
Protein
| Protein ID | pfu_aug2.0_264.1_13904.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_264.1_13904.t1 MYLYNLTLQRATGITCAVHGNFSGSKLQEIIVSRGKIIELFRHDPNTGKVYPVLSVEVLGMVRALMPFRLTGGNKDYVVV GSDSGRIVILEYVPQKNTFEKVHQETFGKSGCRRIVPGQYLAVDPKGRAVMIGAVEKQKLVYIMNRDAQARLTISSPLEA HKANTLVYHMVGVDVGFENPTFACLEIDYEEADTDHTGEGAKNTQQLLTYYELDLGLNHVVRKYSETLEEHANFLVSVPG GSDGPSGNDLDDPERGMIFVCSATHKTKSMFFFLAQTEQGDIFKITLEIDEDMVTEIILKYFDTVPVASSMCVLKSGFLF VASEFGNHYLYQIAQLGDDDDEPRFSSASQLEEGEPHFFSPRPLKNLVQVDEMDSLSPILSCQIADLANEDTPQLYTLCG RGPRSTMRILRHGLERLVECLAETDYKGVRSNMNMRQIRSNEGWSEVSP |
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