Gene
| Gene Model ID | pfu_aug2.0_2648.1_28896 |
|---|---|
| Locus | scaffold2648.1 : 29252 ... 56095 : - |
| To GenomeBrowser | scaffold2648.1:29252..56095 |
| Genes list of scaffold | scaffold2648.1 |
| Synonym | pfu_aug1.0_1618.1_58606 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_2648.1_28896.t1 | 4 | 1 | Miro | 19 | 114 | 2.4e-16 | 60.2 | 6.9e-14 | 1.0e-10 | 42.1 |
| pfu_aug2.0_2648.1_28896.t1 | 2 | 1 | Ras | 27 | 157 | 2.20004e-43 | 147.4 | 4.3e-33 | 6.4e-30 | 103.6 |
| pfu_aug2.0_2648.1_28896.t1 | 2 | 1 | Arf | 45 | 127 | 1.7e-07 | 30.6 | 6.7e-06 | 0.0099 | 15.1 |
| pfu_aug2.0_2648.1_28896.t1 | 2 | 1 | VWA_2 | 140 | 178 | 2.3e-10 | 40.8 | 0.66 | 980.0 | -0.3 |
| pfu_aug2.0_2648.1_28896.t1 | 2 | 2 | Arf | 153 | 200 | 1.7e-07 | 30.6 | 4.5e-05 | 0.067 | 12.4 |
| pfu_aug2.0_2648.1_28896.t1 | 2 | 2 | Ras | 165 | 212 | 2.20004e-43 | 147.4 | 7.5e-14 | 1.1e-10 | 41.1 |
| pfu_aug2.0_2648.1_28896.t1 | 4 | 2 | Miro | 165 | 228 | 2.4e-16 | 60.2 | 5.5e-06 | 0.0082 | 16.6 |
| pfu_aug2.0_2648.1_28896.t1 | 4 | 3 | Miro | 278 | 297 | 2.4e-16 | 60.2 | 4.3 | 6400.0 | -2.4 |
| pfu_aug2.0_2648.1_28896.t1 | 1 | 1 | zf-Sec23_Sec24 | 308 | 343 | 6.4e-07 | 28.8 | 1.1e-09 | 1.6e-06 | 27.5 |
| pfu_aug2.0_2648.1_28896.t1 | 2 | 2 | VWA_2 | 394 | 609 | 2.3e-10 | 40.8 | 1.0e-12 | 1.6e-09 | 38.1 |
| pfu_aug2.0_2648.1_28896.t1 | 4 | 4 | Miro | 466 | 489 | 2.4e-16 | 60.2 | 1.1 | 1700.0 | -0.6 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_2648.1_28896.t1 | gi|524888795|ref|XP_005100962.1| | PREDICTED: circularly permutated Ras protein 1-like isoform X1 [Aplysia californica] | 0.0 |
| pfu_aug2.0_2648.1_28896.t1 | gi|524888797|ref|XP_005100963.1| | PREDICTED: circularly permutated Ras protein 1-like isoform X2 [Aplysia californica] | 0.0 |
| pfu_aug2.0_2648.1_28896.t1 | gi|260785923|ref|XP_002588009.1| | hypothetical protein BRAFLDRAFT_125403 [Branchiostoma floridae] | 0.0 |
| pfu_aug2.0_2648.1_28896.t1 | gi|470297651|ref|XP_004345689.1| | ras-like protein 2 [Capsaspora owczarzaki ATCC 30864] | 0.0 |
| pfu_aug2.0_2648.1_28896.t1 | gi|330796959|ref|XP_003286531.1| | hypothetical protein DICPUDRAFT_168760 [Dictyostelium purpureum] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_2648.1_28896.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_2648.1_28896.t1 atggagtttggtagtaaatttgcctacatgccatccaagatggaggaagacgagattccagacgatgatgacattgttga cacagttctggaggccagtgctacagataaggatataggtgatgacgagtccgtttgtcttgacatcttggatactgccg gccaggaggaatattcgtcaatacgtgacctgtacatgagaactggtgatgctttccttattgtgtacagtgtgaccgac cccatgtccttcgatcaagtggaaccattgtatgaacttatcaagacatttgaatacagaaataaattacttcctgcggt tatatgtgctaacaagcaggatctcacaccgactgtacctaattctgaaggacaaagccttgcagacaagcttggtatac cattccttcccacctcagctaagaccggcctgaatgtccaagaggcttatgaaactgtagttagacaaattcctacactc aatgctcaatgtaaggtagtgatgcttggaagtgggggagcaggaaagtcatctataactacacgatttgtctcggggtc atttgtagaaaactatgatccaactatagaggactcctacagaaaaatgatcagggtcaagggacgcaaggtaaaaagag ataacaatgtgcagaaaagtgccggcagcacaaggagaaaatcaggagatatgacaacattacagagagttggtagcttt ttgtcctcgctgggctccggtattttccgcagatcctcacagcatcagagggaaaggccagtaacggctccagcccagcc tactaaggcaaaatccaggaaaagtgccatgtctaaaatgacaaaatgtgaaagagcagacgccaatgttgtcatggtta cactgaatacactagaggacatgtctaccttagcaacaggagatcctgtctactgcagaaaatgtcaggccataatgtca tgtctatctgaagtagtagaggaggagggagacttaaaatggatctgtgaattctgcggagcagaaaatattgctaaaga catgaataaagaagaggtaccgagtggggaaatgacagattttgccatgagtccgccatcagaggcagcagaaggggatt caactggaaaagaaaacggagctgatgaagggaagaaagcggggccctcaaagggatatttagtgtactgcttagacatc agtggttctatgagctgtagtaataaattaccagaattacaatctcggtggaagaatatgcgagacagaacagattacgg ggatctatctatttccagattggactcaatcaaagaggctgttaaaaggcagttggagaggttaaaagaagaggatcccg atagacgagttatatttattctgttctcctcagaagttactattcttggtgactgtggtacaggagcaacaaaagtcatc aacactgatttaggcaacaatgatgtactgttagagagagggaagacttactcaaacagcatggaaatcaaatgtctgtc tgaatcctacagtaacctgcaggataaggtagagagtctgcgtacagagggttgtacagctttaggccctgccttgtcta tagcctgcggtattgtaacggggaccaaggggtcggaggtcgttctgtgtactgatggagaaccaaatacaggggtcgga ggaactaatatcaacaacacatcgtactataaaatgattggtaactacgctaaagacaatggcattgtcatatcactact agctgtgcaaggagctcctgtaaatctgaggattgtaaaagaatgtgcggagatctctggtggtaccattaacgtactga accctctagagataatgagacagctccgtttaatatcgcagaactacatcgtggcgaccactgtgtgtgtaacattactg ctacatcctgatttagaagtagacgatcctcagtatccaaagggcaatagtcggattgtgaaagaagttggcacagccac aagagacatgaccttgacctttaaatttcggcttaaggatccaaagaaagcaccttctctaaagaaacttccattccagg tacaagtcagttacacattgagagatggacgtaaaatgctcaggacaatcagtaaaacccttgacactacaacaaagaga gaagaaatggaggagggaatgaatgtacatgtcctgagtttagcagctgtccagaaatctgcctacatggcttctaaagg agatgtagaggaagctaggtctcatatcctttctgtaaagaagatggtaaatgaatgctcacgtctagaagaacaaaaag aagaaatgttcgcctttaaccaggaaagcagggaagtcatagatgaaattaaaaagctcagggtacagaagcagcagctg ggaagaacagaactttcagacgagcaatcagcaatacttaccaagaatgctttcagtaacccatccagtcgatacatggg gtcctccaaaaaatcacaaatcctcagtaaacgagttgagaaaaatagcatgttgactgtttatctggttattagtcccc taccggcaacgccgaaggggacttttagtttcctctcggtctgtctgtctgtccgtctgtctgtccgtcnggcccttgga cttagcaaattttgtgaattcagtttcccagacatttcttggctgttgttgcagaagatgaactga |
|
Protein
| Protein ID | pfu_aug2.0_2648.1_28896.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_2648.1_28896.t1 MEFGSKFAYMPSKMEEDEIPDDDDIVDTVLEASATDKDIGDDESVCLDILDTAGQEEYSSIRDLYMRTGDAFLIVYSVTD PMSFDQVEPLYELIKTFEYRNKLLPAVICANKQDLTPTVPNSEGQSLADKLGIPFLPTSAKTGLNVQEAYETVVRQIPTL NAQCKVVMLGSGGAGKSSITTRFVSGSFVENYDPTIEDSYRKMIRVKGRKVKRDNNVQKSAGSTRRKSGDMTTLQRVGSF LSSLGSGIFRRSSQHQRERPVTAPAQPTKAKSRKSAMSKMTKCERADANVVMVTLNTLEDMSTLATGDPVYCRKCQAIMS CLSEVVEEEGDLKWICEFCGAENIAKDMNKEEVPSGEMTDFAMSPPSEAAEGDSTGKENGADEGKKAGPSKGYLVYCLDI SGSMSCSNKLPELQSRWKNMRDRTDYGDLSISRLDSIKEAVKRQLERLKEEDPDRRVIFILFSSEVTILGDCGTGATKVI NTDLGNNDVLLERGKTYSNSMEIKCLSESYSNLQDKVESLRTEGCTALGPALSIACGIVTGTKGSEVVLCTDGEPNTGVG GTNINNTSYYKMIGNYAKDNGIVISLLAVQGAPVNLRIVKECAEISGGTINVLNPLEIMRQLRLISQNYIVATTVCVTLL LHPDLEVDDPQYPKGNSRIVKEVGTATRDMTLTFKFRLKDPKKAPSLKKLPFQVQVSYTLRDGRKMLRTISKTLDTTTKR EEMEEGMNVHVLSLAAVQKSAYMASKGDVEEARSHILSVKKMVNECSRLEEQKEEMFAFNQESREVIDEIKKLRVQKQQL GRTELSDEQSAILTKNAFSNPSSRYMGSSKKSQILSKRVEKNSMLTVYLVISPLPATPKGTFSFLSVCLSVRLSVRXALG LSKFCEFSFPDISWLLLQKMN |
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