Gene
| Gene Model ID | pfu_aug2.0_265.1_17199 |
|---|---|
| Locus | scaffold265.1 : 1 ... 2217 : + |
| To GenomeBrowser | scaffold265.1:1..2217 |
| Genes list of scaffold | scaffold265.1 |
| Synonym | pfu_aug1.0_5898.1_09234 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| 40s ribosomal protein s27-like | GO:0003735 GO:0005634 GO:0005840 GO:0006281 GO:0006919 GO:0008494 GO:0008656 GO:0031571 GO:0042771 GO:0044822 GO:0045727 GO:0046872 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_265.1_17199.t1 | 1 | 1 | Ribosomal_S27e | 26 | 80 | 2.8e-30 | 103.6 | 5.8e-34 | 4.3e-30 | 103.0 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_265.1_17199.t1 | gi|524910831|ref|XP_005110289.1| | PREDICTED: 40S ribosomal protein S27-like isoform X2 [Aplysia californica] | 0.0 |
| pfu_aug2.0_265.1_17199.t1 | gi|40643018|emb|CAD91436.1| | ribosomal protein S27-1 [Crassostrea gigas] | 0.0 |
| pfu_aug2.0_265.1_17199.t1 | gi|71040623|dbj|BAE16015.1| | 0.0 | |
| pfu_aug2.0_265.1_17199.t1 | gi|675854078|ref|XP_009012599.1| | hypothetical protein HELRODRAFT_156474 [Helobdella robusta] | 0.0 |
| pfu_aug2.0_265.1_17199.t1 | gi|701378213|ref|XP_009992813.1| | PREDICTED: 40S ribosomal protein S27-like [Chaetura pelagica] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_265.1_17199.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_265.1_17199.t1 ctcgctaaagacttgctgcatccctcattagaggaggaaagaggaaagtgtaaactgaagagacttgtacagagtccaaa cagctactttatggatgttaaatgtcctggatgctataagataacgacggtattcagtcatgcacagacagttgtcttat gtgtaggatgttctacagtgctgtgtcaacccacgggaggaaaggctcgattaacggaaggttgttccttccgtaagaag caacattaa |
|
Protein
| Protein ID | pfu_aug2.0_265.1_17199.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_265.1_17199.t1 LAKDLLHPSLEEERGKCKLKRLVQSPNSYFMDVKCPGCYKITTVFSHAQTVVLCVGCSTVLCQPTGGKARLTEGCSFRKK QH |
|