Gene
| Gene Model ID | pfu_aug2.0_266.1_20515 |
|---|---|
| Locus | scaffold266.1 : 165192 ... 185685 : - |
| To GenomeBrowser | scaffold266.1:165192..185685 |
| Genes list of scaffold | scaffold266.1 |
| Synonym | pfu_aug1.0_2293.1_66268 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| atp-dependent rna helicase dhx57 | GO:0004004 GO:0005634 GO:0005739 GO:0006396 GO:0044822 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_266.1_20515.t1 | 1 | 1 | RWD | 237 | 407 | 3.8e-12 | 46.0 | 9.3e-15 | 9.9e-12 | 44.7 |
| pfu_aug2.0_266.1_20515.t1 | 1 | 1 | zf-CCCH | 298 | 318 | 4.7e-07 | 29.3 | 9.3e-10 | 9.9e-07 | 28.3 |
| pfu_aug2.0_266.1_20515.t1 | 2 | 1 | OB_NTP_bind | 367 | 404 | 6.9e-17 | 61.3 | 7.3 | 7700.0 | -3.3 |
| pfu_aug2.0_266.1_20515.t1 | 2 | 1 | DEAD | 557 | 714 | 2.2e-10 | 40.2 | 2.0e-12 | 2.1e-09 | 37.0 |
| pfu_aug2.0_266.1_20515.t1 | 2 | 2 | DEAD | 830 | 913 | 2.2e-10 | 40.2 | 0.41 | 430.0 | 0.2 |
| pfu_aug2.0_266.1_20515.t1 | 1 | 1 | Helicase_C | 876 | 967 | 5.0e-13 | 48.7 | 1.1e-15 | 1.1e-12 | 47.5 |
| pfu_aug2.0_266.1_20515.t1 | 1 | 1 | HA2 | 1035 | 1124 | 7.2e-22 | 77.3 | 1.9e-24 | 2.0e-21 | 75.9 |
| pfu_aug2.0_266.1_20515.t1 | 2 | 2 | OB_NTP_bind | 1164 | 1310 | 6.9e-17 | 61.3 | 2.3e-19 | 2.4e-16 | 59.5 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_266.1_20515.t1 | gi|543735661|ref|XP_005508796.1| | PREDICTED: putative ATP-dependent RNA helicase DHX57 [Columba livia] | 0.0 |
| pfu_aug2.0_266.1_20515.t1 | gi|124297149|gb|AAI31535.1| | DEAH (Asp-Glu-Ala-Asp/His) box polypeptide 57 [Homo sapiens] | 0.0 |
| pfu_aug2.0_266.1_20515.t1 | gi|585646318|ref|XP_006882400.1| | PREDICTED: putative ATP-dependent RNA helicase DHX57 [Elephantulus edwardii] | 0.0 |
| pfu_aug2.0_266.1_20515.t1 | gi|697017540|ref|XP_009586361.1| | PREDICTED: putative ATP-dependent RNA helicase DHX57, partial [Fulmarus glacialis] | 0.0 |
| pfu_aug2.0_266.1_20515.t1 | gi|39777586|ref|NP_945314.1| | putative ATP-dependent RNA helicase DHX57 [Homo sapiens] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_266.1_20515.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_266.1_20515.t1 atggacgagaaagtcgtagtgagaaaaagaagaggcagaccaaacagagggggcggtcgcttcaacaggggtagaggaag aggacgaggaagggttgaacatgacagtgaaaacaagccagatgttacacgtaatcaagctgggaccagaagtgcacgag ggacaagggggctttcatccagaggggggtcaagcagagacaccgccaagcaggaggaggtgagagttcctatgcaacgt ttatatatgacggcagaaaatcaggacatggtgagagaaatgctgagggatttacatggagaggaaagtgatgagaacag tgaagaagattttgagtatgatgagttagacttacgtaatgaggaccagtactggcttacagataacacactagttatac aggatgctatgccgtactcaaaacctgagtatgagagagtaaagacagtatcagataaagtcaatcccctggctgttaac aaactaattagatacggctttgagaagcagaggtgcattgaggcgttacagttatgtgacgaggacatagggagtgcctt tgagtacctgtttactaaatgctttgacttaccatgtgatattaatgaatctgatcctactgattacactgatgaagatt ttaacaatgatggtaagcagacaaaagaggaaatacttctgtcgaatggcttatcctgggaggaggtattagacatgcgt aatgatgagatgctggcattacagtcaatctacgatacagctttcattgagaaaatatcaaatagggtgtggatgctcag actggagcttacagcattgtgtgatttggtcatgactaaacagactgggaatcctaaagaagaggtatatacagaggaca aatctgaaagtgaattatgtcaattctacctaaagggtgcatgcaggtttggtgataagtgtaaatacaaacatgaagtg cccacaaacttgcaatctcttgaaataaataaagatgatatggtattcaacgacaatgcaaattttgaattagaattgag atttgcaaaagacaatgtataccccctccagcccccgtttattggtttctcctcattggttcctggattccctcctcaca tatgtttgaacataacagacagacttttctctgaggccaaggagctggcagagagtcaacagccagcttttttctcattg gtcagtattcttgaggatgagaatatattggttgatttgatatccaaacctgcctcagagtacagtctaccagataaccc ggcaccatggaatcgaggacagtcattcggcacatgtaatgaaaataatggaatggttcagcactcaagaatgcgagaat ctggattaacggtcattgatgatggtgactatggggctgattcactcacctcaagggagcaagatttattattgaaaatg ctagagaaggatggaaaggacatcaagaatgacaatgaaaatgatgaagtcagaggagtgcagagaagtctatcgagaga ttctgaccacagcggaggtactgccacaaaagctgaaactcttaagcagaatcgcaggctgaaagaagaatatcttaata agcaaaagagttcccgagcactacaatctatggttacacacaggaagacacttcctgcctggcaaaaacaggaggatatt ttacaactactcagtgagcaccaagttttggtggtcagtggcatgacagggtgtggtaagacaacccaggtgccccagtt catacttgactcctatctcagtaagtcaaaggaccttcacatgtgtaacatcctgtgtacacagccaagacgaatatccg caatggccgtggcagaaagagtcgcagaggaaagggccgagaagcttgggaggagtgttggttatcagatcaggctagag aaagtacagtccccaatgacacgtttactgttctgtactactggtattgtactgcgtcgtttggagggagatgctcgttt agagggagttacacacgtcattattgatgaggtacacgagagatctgaggaaagtgattttctaatgatgtatttgagag atatgttaccaaagcgacgagatctgaaagtgatacttatgagtgctacattgaatgctgatctgttctctgcatacttc aatggatgtccagttattgatataccaggtaaaacttttcctgtggagcaatatttcttagaagatgcaatagaatttac caggtttgtgattgaagaaaagtcaccctacgctcgtcctctaaagaaatctaatgccttctaccacaatgtgaatcaag attatgatgagtatgagaccaatatggaccccagtaaaccacctggtgaaaaagtcaaagatgagaatctctctgtcaaa cagctttattatagatactcagagtataagaaatctacatgtaaggctatgagtataatggaccttgacaagataaactt tgaccttgtcctagatttactggtgtggatagtggaaggagatcacaagttcccagcaggtgccattttggttttccttc cgggatttgcagaaatacaacaattatatgagactttgatcactcatcatttgtttggaaacaggaataaagcaagattt aaagtgataccactccattcaacactctccagtgaggatcaacatgcagtcttcttgagacccccagagggtgtcacaaa aattgtcatagcaacaaacattgcagaaacatccattacaatagacgatattgtatttgttgtggatgctggaaaaatga aagagaaaaggtatgattccactaaggggatggagagtttggacactgtgtgggtgtcccaggctaacgctttacagcgt cgaggacgtgccggtagagtgacctccggcatctgtttccatctcttcaccagtcatcgttataactacagactacagga acagcccattccagagatacagagagcaccattagaacagatttgtttgagaattaagatgctggatattttcaagaaga caggtgttcaggatgtattagagcagttaccagagcctcctgaggaggagtctataatggccgccactaaacgtctacag gatctaggtgctctagacgagaactttgagttaactcctcttggataccatctaggatctttgccagtagatgtcagagt aggtaagctgatgttattaggagctatcttccgttgtctggacccagctgtcaccatagctgccacactcagcttcaagt caccttttgtttctccatttgataagaaagatgaagccagtaaaaagaagttggagtttgctacagggaactcagatcat ttaaccatggtcaatgcttacaagggttggattgaagctaaaatgggcagctcaaacaatgcttatagattctgtcacga aaatttcctgtccatcaaaacgctacagatgttggcaagtatgaagcagcagtttgtagagttgttatctgatatcgggt ttgtaaaggaaggtatcgtagtgagggacgtggagagagccgctagggatggatcagacggggttatacaggtcaccgga aatgaggccaatgtgaactccacaaactggaagttagtgtctgctatacttgttggtgctttgtatcctaacgtagttca agtgatgaagcctgagaataagtttagtcatgctagtacaggtgctgttccaaaggctctaaaaccagatgaactgaaat tcagaacaaaatctgatggttatgttcatatacatccatcatctattaattttcaagtaaactactatgagagtccatac ttggtgtaccatgaaaaagtaaaaacatccagggtatatatccgtgactgttccatggttagtgtatacccactactgat gtttggcgggggtagtatatcagttgacctggacagaggcagctttgtattgtctattgatgatggatggatcagattta tggctgacggttcaaaggttgcggagttagtacgtgagttgagaatggagttggatcagttactaagtgacaagataaag aatcctcatatggacttatgtacatgtccgaaaggaagtaaaattatagacacaatcgtcaaactcataactactcaata a |
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Protein
| Protein ID | pfu_aug2.0_266.1_20515.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_266.1_20515.t1 MDEKVVVRKRRGRPNRGGGRFNRGRGRGRGRVEHDSENKPDVTRNQAGTRSARGTRGLSSRGGSSRDTAKQEEVRVPMQR LYMTAENQDMVREMLRDLHGEESDENSEEDFEYDELDLRNEDQYWLTDNTLVIQDAMPYSKPEYERVKTVSDKVNPLAVN KLIRYGFEKQRCIEALQLCDEDIGSAFEYLFTKCFDLPCDINESDPTDYTDEDFNNDGKQTKEEILLSNGLSWEEVLDMR NDEMLALQSIYDTAFIEKISNRVWMLRLELTALCDLVMTKQTGNPKEEVYTEDKSESELCQFYLKGACRFGDKCKYKHEV PTNLQSLEINKDDMVFNDNANFELELRFAKDNVYPLQPPFIGFSSLVPGFPPHICLNITDRLFSEAKELAESQQPAFFSL VSILEDENILVDLISKPASEYSLPDNPAPWNRGQSFGTCNENNGMVQHSRMRESGLTVIDDGDYGADSLTSREQDLLLKM LEKDGKDIKNDNENDEVRGVQRSLSRDSDHSGGTATKAETLKQNRRLKEEYLNKQKSSRALQSMVTHRKTLPAWQKQEDI LQLLSEHQVLVVSGMTGCGKTTQVPQFILDSYLSKSKDLHMCNILCTQPRRISAMAVAERVAEERAEKLGRSVGYQIRLE KVQSPMTRLLFCTTGIVLRRLEGDARLEGVTHVIIDEVHERSEESDFLMMYLRDMLPKRRDLKVILMSATLNADLFSAYF NGCPVIDIPGKTFPVEQYFLEDAIEFTRFVIEEKSPYARPLKKSNAFYHNVNQDYDEYETNMDPSKPPGEKVKDENLSVK QLYYRYSEYKKSTCKAMSIMDLDKINFDLVLDLLVWIVEGDHKFPAGAILVFLPGFAEIQQLYETLITHHLFGNRNKARF KVIPLHSTLSSEDQHAVFLRPPEGVTKIVIATNIAETSITIDDIVFVVDAGKMKEKRYDSTKGMESLDTVWVSQANALQR RGRAGRVTSGICFHLFTSHRYNYRLQEQPIPEIQRAPLEQICLRIKMLDIFKKTGVQDVLEQLPEPPEEESIMAATKRLQ DLGALDENFELTPLGYHLGSLPVDVRVGKLMLLGAIFRCLDPAVTIAATLSFKSPFVSPFDKKDEASKKKLEFATGNSDH LTMVNAYKGWIEAKMGSSNNAYRFCHENFLSIKTLQMLASMKQQFVELLSDIGFVKEGIVVRDVERAARDGSDGVIQVTG NEANVNSTNWKLVSAILVGALYPNVVQVMKPENKFSHASTGAVPKALKPDELKFRTKSDGYVHIHPSSINFQVNYYESPY LVYHEKVKTSRVYIRDCSMVSVYPLLMFGGGSISVDLDRGSFVLSIDDGWIRFMADGSKVAELVRELRMELDQLLSDKIK NPHMDLCTCPKGSKIIDTIVKLITTQ |
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