Gene
| Gene Model ID | pfu_aug2.0_266.1_20516 |
|---|---|
| Locus | scaffold266.1 : 188515 ... 196736 : + |
| To GenomeBrowser | scaffold266.1:188515..196736 |
| Genes list of scaffold | scaffold266.1 |
| Synonym | pfu_aug1.0_2293.1_66267 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| tubulin--tyrosine ligase | GO:0009987 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_266.1_20516.t1 | 1 | 1 | TTL | 61 | 365 | 0.0 | 188.4 | 0.0 | 0.0 | 187.4 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_266.1_20516.t1 | gi|260831382|ref|XP_002610638.1| | hypothetical protein BRAFLDRAFT_65827 [Branchiostoma floridae] | 0.0 |
| pfu_aug2.0_266.1_20516.t1 | gi|327284659|ref|XP_003227054.1| | PREDICTED: tubulin--tyrosine ligase isoform X1 [Anolis carolinensis] | 0.0 |
| pfu_aug2.0_266.1_20516.t1 | gi|543379750|ref|XP_005533070.1| | PREDICTED: tubulin--tyrosine ligase [Pseudopodoces humilis] | 0.0 |
| pfu_aug2.0_266.1_20516.t1 | gi|165973374|ref|NP_001107149.1| | tubulin--tyrosine ligase [Xenopus (Silurana) tropicalis] | 0.0 |
| pfu_aug2.0_266.1_20516.t1 | gi|733876711|ref|XP_010704864.1| | PREDICTED: tubulin--tyrosine ligase [Meleagris gallopavo] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_266.1_20516.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_266.1_20516.t1 atgtatggatttgtaaggagggatgttaagagtacagtttacaaagccgtgtcagaatttctcctggagaatggagagga ctggaagaaactaccagcaaactcagcatcattccagcttatgtttggtgaaaggaacaagctaccttttggaagactag gacatgagccaggattggtccagctggtcaattactacaggggatctgatgtgttatgtcgtaaaacagcaatggtcaga atgtttaaggagttctataacgggacagctaagcccatgccgccatggttaccagaatccttcgttatctgtcctcagaa tctcactaagaacctggtagagtcgggagagcagggtccggcactgaggaggaaagtgtctcgtcctgacgataggaagg agttcctaactacagcacaaaaactgtcacaacaagagaaaaaacctgtggtgtggatagccaagtcagcggccggtgct aaaggtgagggaatacaaatatccagtaatgctgaggagttggtccagtttgtagacgagcaaacccaggcttatgtcat tcagagatacgtaatgaaccctctccttctggagggaggaaggaaatttgatatcaggtgctgggttttacttgacactg tttacaacgtgtatttattccgtgagggcgtgttaaggacggcttccgagagctacaataaggatgatttgacccatgtg acaagtcacctgaccaaccacgccctacagatggaacaatcaccaaacttcggcatgtacgaggagggcaatgaaatgtt cttccctgaatttgacaggtttttacgcaagaagtacagaacaaaccttgacataagtatcattcctcagatcagagacg tagtgaagaaatctttgatgattgtcaaagagagaatcagtacaaacttgttaggttatatgagcttccagttgtttggt tttgactttctgatagatgacaacctgaaagtccatttgatagaggttaatggagcacctgcctgtgctaggaagctcct gccagacttggccagaagtatagccatgacagctatagatcctgtttacccacctacgtcactcaaaggtaggggagaca atggcttcatcaaaatatga |
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Protein
| Protein ID | pfu_aug2.0_266.1_20516.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_266.1_20516.t1 MYGFVRRDVKSTVYKAVSEFLLENGEDWKKLPANSASFQLMFGERNKLPFGRLGHEPGLVQLVNYYRGSDVLCRKTAMVR MFKEFYNGTAKPMPPWLPESFVICPQNLTKNLVESGEQGPALRRKVSRPDDRKEFLTTAQKLSQQEKKPVVWIAKSAAGA KGEGIQISSNAEELVQFVDEQTQAYVIQRYVMNPLLLEGGRKFDIRCWVLLDTVYNVYLFREGVLRTASESYNKDDLTHV TSHLTNHALQMEQSPNFGMYEEGNEMFFPEFDRFLRKKYRTNLDISIIPQIRDVVKKSLMIVKERISTNLLGYMSFQLFG FDFLIDDNLKVHLIEVNGAPACARKLLPDLARSIAMTAIDPVYPPTSLKGRGDNGFIKI |
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