Gene
| Gene Model ID | pfu_aug2.0_266.1_20532 |
|---|---|
| Locus | scaffold266.1 : 461046 ... 473558 : + |
| To GenomeBrowser | scaffold266.1:461046..473558 |
| Genes list of scaffold | scaffold266.1 |
| Synonym | pfu_aug1.0_2070.1_44225 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_266.1_20532.t1 | 1 | 1 | ZU5 | 195 | 284 | 2.3e-15 | 56.1 | 5.6e-19 | 4.1e-15 | 55.3 |
| pfu_aug2.0_266.1_20532.t1 | 1 | 1 | Death | 513 | 576 | 6.2e-06 | 25.9 | 1.8e-09 | 1.3e-05 | 24.8 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_266.1_20532.t1 | gi|564367086|ref|XP_006244483.1| | PREDICTED: UNC5C-like protein isoform X1 [Rattus norvegicus] | 2.0e-24 |
| pfu_aug2.0_266.1_20532.t1 | gi|354499435|ref|XP_003511814.1| | PREDICTED: UNC5C-like protein isoform X1 [Cricetulus griseus] | 2.0e-24 |
| pfu_aug2.0_266.1_20532.t1 | gi|556976023|ref|XP_005995538.1| | PREDICTED: UNC5C-like protein [Latimeria chalumnae] | 2.0e-24 |
| pfu_aug2.0_266.1_20532.t1 | gi|625292427|ref|XP_007637967.1| | PREDICTED: UNC5C-like protein isoform X2 [Cricetulus griseus] | 9.0e-24 |
| pfu_aug2.0_266.1_20532.t1 | gi|395534107|ref|XP_003769089.1| | 1.0e-23 |
Transcript
| Transcript ID | pfu_aug2.0_266.1_20532.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_266.1_20532.t1 atgacagcgaatttcgtggcaggcattgcagttcttggagtaatcctcctcatagttgttgtagttttagtatttttgac ttgttgtggatggctgttactgaggaagcaacatgacaagatctctgaactagaagaaaatctagatggcttaaggaaaa tatttaacgtcaaaaacagtacgtttgataatccatgcaaggatggttttgattatatcaatgagatcgatagtggggag ccagcgagaccagagtcaggggatagtggacagtccggagggagtggacacagaggatttaattacacaatggttgtggc tgaaaaggtaaaaacggtgaatacaaacataccccagcatgtaagccagcttatcaggactgcagagttggcctatcatg gtgatgctgtgacaaaaagagatctgatgctggacagaattgatataaaatcccctaataaaggtatatcaccaatatca gctgcatctaaacgtcatacgatatttcaaggtcgtcctacgtcatacttgatgtcaggtgaccacgatagcagcgaatt acttcaaaagaaaggcacctttgttcacaagatggtgaatgaagcaggtgatattcttaatgtatcgggtgtggcattga caatcccccagggtgctgtaccaaagggtatgcagatcactgtaggtatcatgtgggaagagaaattcttaccaagactt actgccaaacaagcgctcctcagtcctctggtgatatgtcagccttctgtgactttcaagaaacctgtcacactcacact cccccattgtgctcacaaagtcaaggaggactggagtacaactatacttaaacgtgaaggcagtgaagattctagcaatg actggagtccaattacagacacagatttttcatggaaagagatcacagatacggaagtttcagtggcattgcatcatttt acaggatttactcttgttggtgaatcggcagaggggagagttgcagccaaggcagtgaatatggtggcatttagcaatcc ctttcatataggtgctatgtataagacgaagatatattgtgtaggacattatcattacaaagacaaaattcaggaagtaa agttagaggagaaatctgtaaaccggcgacagtctgagggtgctgtcccattgttggtttaccagaatggagaaaatgtg ctggcttcactggacaagtacaagaatgaagaatgggaactggaaggaggacgggaacagttcaaacaggagcttgacta cagcctcataatgcatgatctattaccgagttgcagctatgttctgtccccgatcaggagtaccaaaaagatattttgtg aatacagcttcacccaaaatatttccaagagtgtgacaaagcttaccattgccgatgaggcacaacatgttatacccgtt ccaatgataccagtacacgatgaccccgtgtcagagatacatagacagatcgttcttatgttagatccaacatcagatac cccaacagaccacggtgactggagaagtctagcggtcaatgtcggatttacaaatgaagaaatcagatggttggaatcaa gacagggccaggaaagtccgacgactattgtattggaaaggttgggcgagttaggaaaaacatatcaaaatcttcacact attctcatcgacatcaaacgacctgatgtggccagtgtcttacagacatttcttcaagaaaatggaaatgacgttatact tcagaaagaggacagagtgagaatgaggcaacactcagtaaatactcccgtgtga |
|
Protein
| Protein ID | pfu_aug2.0_266.1_20532.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_266.1_20532.t1 MTANFVAGIAVLGVILLIVVVVLVFLTCCGWLLLRKQHDKISELEENLDGLRKIFNVKNSTFDNPCKDGFDYINEIDSGE PARPESGDSGQSGGSGHRGFNYTMVVAEKVKTVNTNIPQHVSQLIRTAELAYHGDAVTKRDLMLDRIDIKSPNKGISPIS AASKRHTIFQGRPTSYLMSGDHDSSELLQKKGTFVHKMVNEAGDILNVSGVALTIPQGAVPKGMQITVGIMWEEKFLPRL TAKQALLSPLVICQPSVTFKKPVTLTLPHCAHKVKEDWSTTILKREGSEDSSNDWSPITDTDFSWKEITDTEVSVALHHF TGFTLVGESAEGRVAAKAVNMVAFSNPFHIGAMYKTKIYCVGHYHYKDKIQEVKLEEKSVNRRQSEGAVPLLVYQNGENV LASLDKYKNEEWELEGGREQFKQELDYSLIMHDLLPSCSYVLSPIRSTKKIFCEYSFTQNISKSVTKLTIADEAQHVIPV PMIPVHDDPVSEIHRQIVLMLDPTSDTPTDHGDWRSLAVNVGFTNEEIRWLESRQGQESPTTIVLERLGELGKTYQNLHT ILIDIKRPDVASVLQTFLQENGNDVILQKEDRVRMRQHSVNTPV |
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