Gene
| Gene Model ID | pfu_aug2.0_267.1_23769 |
|---|---|
| Locus | scaffold267.1 : 21335 ... 48065 : - |
| To GenomeBrowser | scaffold267.1:21335..48065 |
| Genes list of scaffold | scaffold267.1 |
| Synonym | pfu_aug1.0_2307.1_22943 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_267.1_23769.t2 | 1 | 1 | RhoGAP | 53 | 200 | 5.8e-40 | 136.3 | 2.39622e-43 | 1.8e-39 | 134.7 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_267.1_23769.t2 | gi|390359804|ref|XP_791980.3| | 0.0 | |
| pfu_aug2.0_267.1_23769.t2 | gi|551492259|ref|XP_005797699.1| | PREDICTED: protein FAM13A-like [Xiphophorus maculatus] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_267.1_23769.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_267.1_23769.t1 atggcagggagggcctcacccttcatattagacagtgatggtggatatagcatcattgaatctccagtaccctcagcaag aacgacgcaggctgtagaaaaagtaataacgcagacaatatctgaagcgctgtttggagatgacgtcagcttacagggaa gtcaggactttatgatagatcttcccaacggttctgtagtagatgaagatcattcaagcccagatactccaacaatggaa agcaaggaaaactttgaagacagggtaccagtgaaagatagaatcaaaaactttgagatgggaggagagaaaacatttga ggttgatgaaaacagacctttcaagcaacattcatcatctagttttgatttgtacaaaagtaatggaggattagtgtcac agacatcaaagacactaaaacatgaagactatcttcacaatagttttcaagactcaagttcaagatctgacatagaacat atggatattgaacgtgagcaagatgaatttgagagtgtgaaacgtgattctgggacattgtcatcatttcagttcaaaag accatcaggacccaaaaatagacgttctccaagtagacgatctcgcagtaattccctcgaaaaggagatgggagatggcg atgaaatcaaagttaacgataggaatgacaatcacgtacttaccagtcttgatccctccccaagtcaccagcatgatccc cctacaaaaggggagcaactctctcagccccctcaacctaaaccaagaatagctttcctggaactcaccaataaccaatc agaaaacagatccccagacgtatctcccaactccggtagaaaacccttcatacccccactggatttttccactttacatg agcacatagacagtacagatcctatactggctcataaaggacagtctgtttcctatcagcgtgccaaatcacatttaaac ggagatgaatctgcagatgtcttgatttctcctcgtaatgcaaaacttataaagcgcaagtcacacaactcagaaaatgt cttcatcactgataatttttacgagggcaaggagccccagctctcaccaagtgcctatcaaacaggtcacagccaaagtt cattgctgaatacagacatacctccatctccgcctgtggatcaagaacattttaagaagcacataggtacagctgtagag gacgagatcacattgaaaatgaagcaacagcataaaaaagtccatgttctgaaaaagaaattgaagcacttcgaagaaac atttgaaaaagaacaaggttacaagccatctcatgctgacaagactgggaatgctacagtaaagaaatggatgaatgatc tgtcaaaggctaaaagggagatcaaacgtttaaaagatgaggctgaaatagggagtaggagtcgacatggtagtggtgcc tcctccagtggggagaggatggatccccctgaccttccccctaccatggggcacaccctggatctcatattaaaaagact gggggataaaaggagggagtgccataggcctgaagatgtagatctgatgaccagagatcaagttcaggaggagaaattag cagttcagaaagctttgctgcattttgaaaatattcatggaagacctaaacttaaggaagagaaggaccttatgaggcct ctgtatgacagatacaggaaaattaagcgcattatagccaaacccatgtctcccagggaaaagaacgaattgcagatcat ccatgaggatcaagagctgaactctgtaccaaactactcaaagccaagggtaccagtacatgtgcctacaggagaggtag acgagaatggtgaagatcacggcacgcaggatatgggtacgatggactttattgtgactcgtgatttctctttgtatcgt gacactgctcagcctctacctaaggaaaacattcagagtggccattctccgaaagtgaagaggaaattagaattaccagg actggaggaggaagaggagaacgtggaaaccagaaactcgacgacggagccgaatctgcatgaaatgtcattatctgaat tgcaagatgaatttattcgatcaaaaggagagaaaaagaggcttcggagaacactacggacgtttgaagaagatttcttc aataaaaatggaagacgcgtacaaaaagaggacagagtgccttttcaagagcattacaactcatacaagtatgatggnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntttatgtatagcatcgagtgaaagcacg gtatgctttcggatatttattgctggttaccatgggagcagtcaatgcagaaatggcatttcgtacaaaacgtccactta a |
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| Transcript ID | pfu_aug2.0_267.1_23769.t2 |
| Definition | - |
>pfu_aug2.0_267.1_23769.t2 atggctaatggtgtaagtaacaatggaccctcaatggagagaatgaaaaaattactaagtcccggtgctcgtaagaaacc actgaccaatagccataggacatttggtgtgccactagaagacctagtgtctagatctcaggatagatattatgtgccat atattgtatccaggatttgtgaacatatccaacataaaggttttgagcatgagggactgtttcgtgttaacggaagtact cgtatcgtagagaagttaaggatgagttttgatcagcgcggtgatgctgactttgaggaagaagaagatctgatggccgt agcaggcttactcaagttatttctgagagaattacctggagctttaataccagaaacaaggaccaaacagttcatctcca tacaggaagtttatataaatgacccagagtcttgtatccaccagctgagagaggaagtgaggacattaccagaagataat tacaatttactcagatatctagtcaggtttctagtggtcgtggcaagctatgaaaagaagaataaaatgcatcccatggc tctagcaatcgtgtttggacctaatgtcttcaaatgtggacagggtattgtgggattaaaggatcagggtacggtgaatc aaattgtttacaagttcatcacgtactacgacagactttttaaagaggaaggggaagagtcaccacaggatcaatggatt aaaaagaagcagcgtgcccctccccgccctccccctccaaagtttcatgtagaggagtataaaccgacaccctctcctag gcttcataagaccaagtcagagccgtatgacagcagccactaccaagactatgaggagcaagataaaagaaagggcagta tcccctcccctatgttctctgatgatgaaatggcagggagggcctcacccttcatattagacagtgatggtggatatagc atcattgaatctccagtaccctcagcaagaacgacgcaggctgtagaaaaagtaataacgcagacaatatctgaagcgct gtttggagatgacgtcagcttacagggaagtcaggactttatgatagatcttcccaacggttctgtagtagatgaagatc attcaagcccagatactccaacaatggaaagcaaggaaaactttgaagacagggtaccagtgaaagatagaatcaaaaac tttgagatgggaggagagaaaacatttgaggttgatgaaaacagacctttcaagcaacattcatcatctagttttgattt gtacaaaagtaatggaggattagtgtcacagacatcaaagacactaaaacatgaagactatcttcacaatagttttcaag actcaagttcaagatctgacatagaacatatggatattgaacgtgagcaagatgaatttgagagtgtgaaacgtgattct gggacattgtcatcatttcagttcaaaagaccatcaggacccaaaaatagacgttctccaagtagacgatctcgcagtaa ttccctcgaaaaggagatgggagatggcgatgaaatcaaagttaacgataggaatgacaatcacgtacttaccagtcttg atccctccccaagtcaccagcatgatccccctacaaaaggggagcaactctctcagccccctcaacctaaaccaagaata gctttcctggaactcaccaataaccaatcagaaaacagatccccagacgtatctcccaactccggtagaaaacccttcat acccccactggatttttccactttacatgagcacatagacagtacagatcctatactggctcataaaggacagtctgttt cctatcagcgtgccaaatcacatttaaacggagatgaatctgcagatgtcttgatttctcctcgtaatgcaaaacttata aagcgcaagtcacattcattgctgaatacagacatacctccatctccgcctgtggatcaagaacattttaagaagcacat aggtacagctgtagaggacgagatcacattgaaaatgaagcaacagcataaaaaagtccatgttctgaaaaagaaattga agcacttcgaagaaacatttgaaaaagaacaaggttacaagccatctcatgctgacaagactgggaatgctacagtaaag aaatggatgaatgatctgtcaaaggctaaaagggagatcaaacgtttaaaagatgaggctgaaatagggagtaggagtcg acatggtagtggtgcctcctccagtggggagaggatggatccccctgaccttccccctaccatggggcacaccctggatc tcatattaaaaagactgggggataaaaggagggagtgccataggcctgaagatgtagatctgatgaccagagatcaagtt caggaggagaaattagcagttcagaaagctttgctgcattttgaaaatattcatggaagacctaaacttaaggaagagaa ggaccttatgaggcctctgtatgacagatacaggaaaattaagcgcattatagccaaacccatgtctcccagggaaaaga acgaattgcagatcatccatgaggatcaagagctgaactctgtaccaaactactcaaagccaagggtaccagtacatgtg cctacaggagaggtagacgagaatggtgaagatcacggcacgcaggatatgggtacgatggactttattgtgactcgtga tttctctttgtatcgtgacactgctcagcctctacctaaggaaaacattcagagtggccattctccgaaagtgaagagga aattagaattaccaggactggaggaggaagaggagaacgtggaaaccagaaactcgacgacggagccgaatctgcatgaa atgtcattatctgaattgcaagatgaatttattcgatcaaaaggagagaaaaagaggcttcggagaacactacggacgtt tgaagaagatttcttcaataaaaatggaagacgcgtacaaaaagaggacagagtgccttttcaagagcattacaactcat acaagtttgttggtgtggaagataatttttttttcctgtctgtctgtaagaacttggtatttagtgatgtactgtaa |
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Protein
| Protein ID | pfu_aug2.0_267.1_23769.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_267.1_23769.t1 MAGRASPFILDSDGGYSIIESPVPSARTTQAVEKVITQTISEALFGDDVSLQGSQDFMIDLPNGSVVDEDHSSPDTPTME SKENFEDRVPVKDRIKNFEMGGEKTFEVDENRPFKQHSSSSFDLYKSNGGLVSQTSKTLKHEDYLHNSFQDSSSRSDIEH MDIEREQDEFESVKRDSGTLSSFQFKRPSGPKNRRSPSRRSRSNSLEKEMGDGDEIKVNDRNDNHVLTSLDPSPSHQHDP PTKGEQLSQPPQPKPRIAFLELTNNQSENRSPDVSPNSGRKPFIPPLDFSTLHEHIDSTDPILAHKGQSVSYQRAKSHLN GDESADVLISPRNAKLIKRKSHNSENVFITDNFYEGKEPQLSPSAYQTGHSQSSLLNTDIPPSPPVDQEHFKKHIGTAVE DEITLKMKQQHKKVHVLKKKLKHFEETFEKEQGYKPSHADKTGNATVKKWMNDLSKAKREIKRLKDEAEIGSRSRHGSGA SSSGERMDPPDLPPTMGHTLDLILKRLGDKRRECHRPEDVDLMTRDQVQEEKLAVQKALLHFENIHGRPKLKEEKDLMRP LYDRYRKIKRIIAKPMSPREKNELQIIHEDQELNSVPNYSKPRVPVHVPTGEVDENGEDHGTQDMGTMDFIVTRDFSLYR DTAQPLPKENIQSGHSPKVKRKLELPGLEEEEENVETRNSTTEPNLHEMSLSELQDEFIRSKGEKKRLRRTLRTFEEDFF NKNGRRVQKEDRVPFQEHYNSYKYDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLCIASSEST VCFRIFIAGYHGSSQCRNGISYKTST |
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| Protein ID | pfu_aug2.0_267.1_23769.t2 |
| Definition | - |
>pfu_aug2.0_267.1_23769.t2 MANGVSNNGPSMERMKKLLSPGARKKPLTNSHRTFGVPLEDLVSRSQDRYYVPYIVSRICEHIQHKGFEHEGLFRVNGST RIVEKLRMSFDQRGDADFEEEEDLMAVAGLLKLFLRELPGALIPETRTKQFISIQEVYINDPESCIHQLREEVRTLPEDN YNLLRYLVRFLVVVASYEKKNKMHPMALAIVFGPNVFKCGQGIVGLKDQGTVNQIVYKFITYYDRLFKEEGEESPQDQWI KKKQRAPPRPPPPKFHVEEYKPTPSPRLHKTKSEPYDSSHYQDYEEQDKRKGSIPSPMFSDDEMAGRASPFILDSDGGYS IIESPVPSARTTQAVEKVITQTISEALFGDDVSLQGSQDFMIDLPNGSVVDEDHSSPDTPTMESKENFEDRVPVKDRIKN FEMGGEKTFEVDENRPFKQHSSSSFDLYKSNGGLVSQTSKTLKHEDYLHNSFQDSSSRSDIEHMDIEREQDEFESVKRDS GTLSSFQFKRPSGPKNRRSPSRRSRSNSLEKEMGDGDEIKVNDRNDNHVLTSLDPSPSHQHDPPTKGEQLSQPPQPKPRI AFLELTNNQSENRSPDVSPNSGRKPFIPPLDFSTLHEHIDSTDPILAHKGQSVSYQRAKSHLNGDESADVLISPRNAKLI KRKSHSLLNTDIPPSPPVDQEHFKKHIGTAVEDEITLKMKQQHKKVHVLKKKLKHFEETFEKEQGYKPSHADKTGNATVK KWMNDLSKAKREIKRLKDEAEIGSRSRHGSGASSSGERMDPPDLPPTMGHTLDLILKRLGDKRRECHRPEDVDLMTRDQV QEEKLAVQKALLHFENIHGRPKLKEEKDLMRPLYDRYRKIKRIIAKPMSPREKNELQIIHEDQELNSVPNYSKPRVPVHV PTGEVDENGEDHGTQDMGTMDFIVTRDFSLYRDTAQPLPKENIQSGHSPKVKRKLELPGLEEEEENVETRNSTTEPNLHE MSLSELQDEFIRSKGEKKRLRRTLRTFEEDFFNKNGRRVQKEDRVPFQEHYNSYKFVGVEDNFFFLSVCKNLVFSDVL |
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