Gene
| Gene Model ID | pfu_aug2.0_267.1_23770 |
|---|---|
| Locus | scaffold267.1 : 65326 ... 83743 : + |
| To GenomeBrowser | scaffold267.1:65326..83743 |
| Genes list of scaffold | scaffold267.1 |
| Synonym | pfu_aug1.0_33297.1_55457 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| stam-binding protein | GO:0009987 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_267.1_23770.t1 | 3 | 1 | USP8_dimer | 19 | 121 | 4.1e-22 | 78.3 | 2.7e-25 | 4.1e-22 | 78.3 |
| pfu_aug2.0_267.1_23770.t1 | 3 | 2 | USP8_dimer | 142 | 182 | 4.1e-22 | 78.3 | 2.9 | 4200.0 | -2.4 |
| pfu_aug2.0_267.1_23770.t1 | 3 | 1 | JAB | 166 | 166 | 6.1e-19 | 67.8 | 7.3 | 11000.0 | -3.9 |
| pfu_aug2.0_267.1_23770.t1 | 3 | 3 | USP8_dimer | 316 | 356 | 4.1e-22 | 78.3 | 2.6 | 3900.0 | -2.3 |
| pfu_aug2.0_267.1_23770.t1 | 3 | 2 | JAB | 341 | 341 | 6.1e-19 | 67.8 | 6.6 | 9800.0 | -3.8 |
| pfu_aug2.0_267.1_23770.t1 | 3 | 3 | JAB | 470 | 575 | 6.1e-19 | 67.8 | 4.1e-22 | 6.1e-19 | 67.8 |
| pfu_aug2.0_267.1_23770.t1 | 1 | 1 | Prok-JAB | 493 | 568 | 8.5e-07 | 28.4 | 2.1e-09 | 3.2e-06 | 26.6 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_267.1_23770.t1 | gi|524871517|ref|XP_005092531.1| | PREDICTED: STAM-binding protein-like [Aplysia californica] | 0.0 |
| pfu_aug2.0_267.1_23770.t1 | gi|72022105|ref|XP_788766.1| | PREDICTED: STAM-binding protein-like A [Strongylocentrotus purpuratus] | 0.0 |
| pfu_aug2.0_267.1_23770.t1 | gi|719731839|ref|XP_010213653.1| | PREDICTED: STAM-binding protein [Tinamus guttatus] | 0.0 |
| pfu_aug2.0_267.1_23770.t1 | gi|410923291|ref|XP_003975115.1| | PREDICTED: STAM-binding protein [Takifugu rubripes] | 0.0 |
| pfu_aug2.0_267.1_23770.t1 | gi|328722967|ref|XP_001947218.2| | PREDICTED: STAM-binding protein isoform X1 [Acyrthosiphon pisum] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_267.1_23770.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_267.1_23770.t1 atggcaggatcaattgcgaatctttcgctgacaaacaccatacgagacccagcagctagagtgagagagctgtgtaatta tgcctgcaaagtcgacgtagatgcttccataccggccaagcgatatttccgctcgggtcatgaaatgttgaggatggcca aagtgtatcaagatgagcaggactatgaaagggcattcatactgtacacaaagtttatcacattatttgtagagaaactg ccaaaacatccagattataaagttgtaccagccactgatgttggaacaatgaaaaagaaagtcaaattggtgtttccgat tgctgaggaaataaaaagcatcttaaagaaaagatacacagaaattgaaaagaaaagactagaacttgagagaattgaac aagaggagttggaaagagaacaagaaaagttacgcaaagaagaagaggagagaagggcaaaacaagaggagcttgatcaa caaaaccgaaaagaggctgaagaacgatggcttgacgaacaggaacagcggttacaggaactgaaagcacaggaaatgat gaaaaaccttaattatgaacaagatagtaatcgtacagatagagacagtgataaaacgggactaaataatcaaaggccta ttcctacggcacctgctggtagcttggcgttcattcctaataacctggttactgatactggagttgagaaaaatcttatc aaagacacccgatctatgccatcaataccagacagggaattaaagaaaaatttactttataatgatttttcatcaggaac ggctgaagggattttgatgaaacttggtaggtatgaagtactcatggtcccctacaagtgttgttgttttttcgtccgga tctgtcaacaggtggcgccaccacagccaaaaagaattgaacaagaggagttggaaagagaacaagaaaagttacgtaaa gaagaggaggagagaagggcaaaacaagaggagctggatcaacaaaaccgaaaagaggcggaggaacgatggctggacga acaggaacagcggttacaggaactaaaagcgcaggaaatgatgaaaaatcttaattatgagcaagacagtaatcgtacag atagagacagtgataaaacgggacttaataatcaaaggcctattcctacggcacctgctggtagcttggcattcattcca aataacctggttactgatactggagttgagaaaaatctgatcaaagatacccgatctgtgccatcaataccagacaggga gttaaagaaaaatttactttataatgatttttcatcagggggagtgccagaaatcaacaggagcaacaagccaatattag accattttacaagtgtaggatttgatagcgggaacaagggtggtctgagagacgtggtggtaccttcagatctgatgagg aaattcttggttatagctgaacataatacaattaagagtatagaaacatgtggcatccttgccggaaaattggtacagaa taacttccatattacacacgtgctgattcccaagcagtcggggacgacagatacatgtgtggccgaggacgaggaggact tgtttatgtaccaagacccaagggacctcatcacacttggatggatccatacccatccatcgcagacagcgtttttatcc agtgtggatatgcacaaccagtatggttaccaagccatgttaccagaggccatagctattgtctgtgcacctaaatttca ggagttggtatcttttgattacatatttacttattatgtcaccttcaacacaagggagacataa |
|
Protein
| Protein ID | pfu_aug2.0_267.1_23770.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_267.1_23770.t1 MAGSIANLSLTNTIRDPAARVRELCNYACKVDVDASIPAKRYFRSGHEMLRMAKVYQDEQDYERAFILYTKFITLFVEKL PKHPDYKVVPATDVGTMKKKVKLVFPIAEEIKSILKKRYTEIEKKRLELERIEQEELEREQEKLRKEEEERRAKQEELDQ QNRKEAEERWLDEQEQRLQELKAQEMMKNLNYEQDSNRTDRDSDKTGLNNQRPIPTAPAGSLAFIPNNLVTDTGVEKNLI KDTRSMPSIPDRELKKNLLYNDFSSGTAEGILMKLGRYEVLMVPYKCCCFFVRICQQVAPPQPKRIEQEELEREQEKLRK EEEERRAKQEELDQQNRKEAEERWLDEQEQRLQELKAQEMMKNLNYEQDSNRTDRDSDKTGLNNQRPIPTAPAGSLAFIP NNLVTDTGVEKNLIKDTRSVPSIPDRELKKNLLYNDFSSGGVPEINRSNKPILDHFTSVGFDSGNKGGLRDVVVPSDLMR KFLVIAEHNTIKSIETCGILAGKLVQNNFHITHVLIPKQSGTTDTCVAEDEEDLFMYQDPRDLITLGWIHTHPSQTAFLS SVDMHNQYGYQAMLPEAIAIVCAPKFQELVSFDYIFTYYVTFNTRET |
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