Gene
| Gene Model ID | pfu_aug2.0_267.1_23778 |
|---|---|
| Locus | scaffold267.1 : 162827 ... 179895 : - |
| To GenomeBrowser | scaffold267.1:162827..179895 |
| Genes list of scaffold | scaffold267.1 |
| Synonym | pfu_aug1.0_9046.1_24518 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| polycystic kidney disease protein 2 | GO:0005509 GO:0016020 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_267.1_23778.t1 | 2 | 1 | Ion_trans | 96 | 136 | 1.2e-24 | 86.6 | 0.11 | 160.0 | 1.4 |
| pfu_aug2.0_267.1_23778.t1 | 2 | 1 | PKD_channel | 114 | 143 | 0.0 | 474.2 | 0.6 | 890.0 | -2.0 |
| pfu_aug2.0_267.1_23778.t1 | 2 | 2 | PKD_channel | 163 | 584 | 0.0 | 474.2 | 0.0 | 0.0 | 474.2 |
| pfu_aug2.0_267.1_23778.t1 | 2 | 2 | Ion_trans | 369 | 577 | 1.2e-24 | 86.6 | 8.1e-28 | 1.2e-24 | 86.6 |
| pfu_aug2.0_267.1_23778.t1 | 3 | 1 | EF-hand_1 | 621 | 646 | 8.5e-06 | 24.7 | 1.5e-05 | 0.022 | 14.0 |
| pfu_aug2.0_267.1_23778.t1 | 3 | 2 | EF-hand_1 | 655 | 675 | 8.5e-06 | 24.7 | 9.2e-05 | 0.14 | 11.5 |
| pfu_aug2.0_267.1_23778.t1 | 3 | 3 | EF-hand_1 | 743 | 749 | 8.5e-06 | 24.7 | 3.8 | 5700.0 | -2.9 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_267.1_23778.t1 | gi|676489786|ref|XP_009065053.1| | hypothetical protein LOTGIDRAFT_229509 [Lottia gigantea] | 0.0 |
| pfu_aug2.0_267.1_23778.t1 | gi|524884199|ref|XP_005098722.1| | PREDICTED: polycystin-2-like isoform X5 [Aplysia californica] | 0.0 |
| pfu_aug2.0_267.1_23778.t1 | gi|524884191|ref|XP_005098718.1| | PREDICTED: polycystin-2-like isoform X1 [Aplysia californica] | 0.0 |
| pfu_aug2.0_267.1_23778.t1 | gi|156401013|ref|XP_001639086.1| | predicted protein [Nematostella vectensis] | 0.0 |
| pfu_aug2.0_267.1_23778.t1 | gi|47551289|ref|NP_999827.1| | polycystic kidney disease protein 2 [Strongylocentrotus purpuratus] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_267.1_23778.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_267.1_23778.t1 atgggaacgaaaaaaatatttcgtgggaacgaattattatttcgagggaacgaaataatatttcttgggaacgaaacaat acgtcttgggaacgaaatattatttcgagggaacgaaatatgtgtgtatgaaatagatgaaccaacagttactgccagat gcccatgcgttcagggtcctgacttctcatgtgagacttggacaaccttttgcaatttagtagccaccacagggacaaag aaaaagttgggatgctgggggacgttttgcaaaggtgtccgatcactatgggccacacgtcaaacagaagaaaccaaggg aaaccgagaactacatgtaaagacgactctgagagaactgatcatctacatcgtgtttctggtcattctctgtgtagtta catttggaatgacatcaacaacaatgtactactacaccaaggtaatgaacgacctgtttgtggagaccactcacacaggg ggcggatccttcaagaccatcaccaatgttaacgacttctggaagtttgctagagagaccctggcaaagtcccttcactg ggaaacctattataacggacagaatatcacagaccccgccgcccaaggttacatctactatgagaacaaactactcggcg tcccccgtattaggcagctaaaagtcagcagcaactcctgcgtggtacatgatgacttcaaagatgtaattcgggaatgt tacgattcgtactcctcaaatcttgaagataaaaccactgtgactaaaggcaactacacagcttggacatacaggtcaga agatgaccttgatgggtcatcatattggggcaaactgacccactacagcggagcaggttacgcacagaatctgggaagaa ctaaagccgagacacaagccataattgaatacctcttcagtgaactttggattcaaagagggactagagttgtgtttata gattttaccgtttacaatgctaacatcaatctcttctgtgtggtgaagctcgtagtggaattccctgcgactggtggcgc catctcgtcctctgatttccgtactgtcaaactgataagatatgtcaccattaaggattacttcatcatggcctgtgaat ttatcttcgtattgttcatcgtctactacatgattgaggagggcattgagatcaagaagcacaagctgtcctacttcaag agcttctggaacatccttgacattctggtgatcatcattgcgatcctctgtgtggcgtttgacatttatcggcagatcgc agtagacaagaaactgagtgagctcattggtaaccctgacgagcatgccgacttcgacttcttgagctactggcaaactc gatttgataacgccattgccattgccgtcttctttgcttggatcaagatcttcaagtacatcagcttcaacaagacaatg acccagctgtcctccaccctcggtcgctgtgccaaggatctggccggatttgccgttatgttcctgatcatcttcttggc cttcactcagctcggatatctgttgtttggcacccaagtcaaggacttcagcagcttccaagactctttcttcaccctgt tccgtatcattctgggagactttgacttccatcagctggaggccgccaacagagttttgggtccaatattcttcatcctc tttgtattcttcgtcttcttcgttctgatcaacatgttcttggctattatcaacgacacttactcggaggtcaagggcga tatggccaaccagaagaatgagttcgaaatgacagactacttcaagagaggctacatgaagatggttgagaaactgaact tcaaacgagacaagattgttgatatccagaaagctcttcaaaatgctgacatcaaccaggatcagaaacttgactttgac gaatggcgacaggatctcaaaatccgaggatatgctgatggagaaatcgaggctctgttcgccaagtatgacattgatgg tgaccgtgttctggatgaggaagaacagcgacgcatgcaggaagatctcaataaccaaaaggctgcacttaacaaagaat acgaggaacttgacaaaagtggaaacagaccaagcacagctagacaggccagtagtcgcacaagtttcaacgaagacagt ggagaagacagtgacgacgaacgcagtggttcaaaatcaacacgatcgggtcgtgcttcaaatggtgtttcatacgaaga atttacagtgttatcacggagagtggacagaatggaacattctattggcagtatagtttcaaaaatagacgctgtactcg tcaaattagaagccatggaaaaagcaaaattaaaaagaagagaaaccatgggcaaaatattagatagcataacagagtct gatggcaatagtgacgaagtaaaaagagagcagatggaaaaattagtacgagaagaattggaaagatgggattccgagac ctcattttcccccagtggtcgtggggcttcacccagtagtggcagcagtgcccgtggggtcagatcacgatctagaccag ggtcaggccaacaaggggtgctttataccttcaaattcggcaaacaaccgatgcataacatggatttttatgacgcaaga gggtatcacgtttag |
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Protein
| Protein ID | pfu_aug2.0_267.1_23778.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_267.1_23778.t1 MGTKKIFRGNELLFRGNEIIFLGNETIRLGNEILFRGNEICVYEIDEPTVTARCPCVQGPDFSCETWTTFCNLVATTGTK KKLGCWGTFCKGVRSLWATRQTEETKGNRELHVKTTLRELIIYIVFLVILCVVTFGMTSTTMYYYTKVMNDLFVETTHTG GGSFKTITNVNDFWKFARETLAKSLHWETYYNGQNITDPAAQGYIYYENKLLGVPRIRQLKVSSNSCVVHDDFKDVIREC YDSYSSNLEDKTTVTKGNYTAWTYRSEDDLDGSSYWGKLTHYSGAGYAQNLGRTKAETQAIIEYLFSELWIQRGTRVVFI DFTVYNANINLFCVVKLVVEFPATGGAISSSDFRTVKLIRYVTIKDYFIMACEFIFVLFIVYYMIEEGIEIKKHKLSYFK SFWNILDILVIIIAILCVAFDIYRQIAVDKKLSELIGNPDEHADFDFLSYWQTRFDNAIAIAVFFAWIKIFKYISFNKTM TQLSSTLGRCAKDLAGFAVMFLIIFLAFTQLGYLLFGTQVKDFSSFQDSFFTLFRIILGDFDFHQLEAANRVLGPIFFIL FVFFVFFVLINMFLAIINDTYSEVKGDMANQKNEFEMTDYFKRGYMKMVEKLNFKRDKIVDIQKALQNADINQDQKLDFD EWRQDLKIRGYADGEIEALFAKYDIDGDRVLDEEEQRRMQEDLNNQKAALNKEYEELDKSGNRPSTARQASSRTSFNEDS GEDSDDERSGSKSTRSGRASNGVSYEEFTVLSRRVDRMEHSIGSIVSKIDAVLVKLEAMEKAKLKRRETMGKILDSITES DGNSDEVKREQMEKLVREELERWDSETSFSPSGRGASPSSGSSARGVRSRSRPGSGQQGVLYTFKFGKQPMHNMDFYDAR GYHV |
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