Gene
| Gene Model ID | pfu_aug2.0_267.1_23783 |
|---|---|
| Locus | scaffold267.1 : 226975 ... 239627 : + |
| To GenomeBrowser | scaffold267.1:226975..239627 |
| Genes list of scaffold | scaffold267.1 |
| Synonym | pfu_aug1.0_3293.1_23284 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| u4 tri-snrnp-associated protein 2 | GO:0006511 GO:0008270 GO:0036459 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_267.1_23783.t1 | 1 | 1 | zf-UBP | 17 | 78 | 1.3e-12 | 47.5 | 1.2e-15 | 3.5e-12 | 46.2 |
| pfu_aug2.0_267.1_23783.t1 | 1 | 1 | UCH | 117 | 444 | 6.7e-39 | 133.6 | 3.39955e-42 | 1.0e-38 | 133.0 |
| pfu_aug2.0_267.1_23783.t1 | 1 | 1 | UCH_1 | 118 | 400 | 3.2e-07 | 30.1 | 2.5e-10 | 7.4e-07 | 28.8 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_267.1_23783.t1 | gi|242017490|ref|XP_002429221.1| | U4/U6.U5 tri-snRNP-associated protein, putative [Pediculus humanus corporis] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_267.1_23783.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_267.1_23783.t1 atggatgaatgcgcttagtcagtactggactttgattttgagaagttgtgttctgtatcactttctcatattaatgttta cgcctgtatggtgtgtgggaagtactttcaaggtagaggtaagatgtcacatgcctacacacatagtgtccaagagggtc atcatgtatacctcaatctacagacacagaaattttactgtctccctgacaattaccaaatcatagattcatcattagaa gatatcatctatgtcctgaatcccactttcaccacagaggccatttcagtgttagataccaacagtaaattatccagagc atatgacggaactacatatttaccaggagttgtgggtttgaacaacatcaaagaaaatgattactgcaacgtcattttac aagcttttgcccacgtgtcacccctccggaactactttctccaagaggaaagctacaagaagatcaagcggccccctgga gatataatgataacacttgtgcaaagattcggagaatttctacgaaagttatggaaccctagaaatttcaaagctcatgt cagtcctcatgaaatgttacaggccgttgtcttgtgcagcaagaagaaatttcaaatcaccgaacaaggagatgctttag aattcatgtcttggatcctgaatgcccttcaccttgccttgaatggttccaggaagttaagtagcagcataatcaataaa actttcagaggcaaaatgagagtgtatacaagaaaagtcctaccaatcgatctgaaagacgaagaaaaggccaaattact agaaacaggagaatatatggaaacaatggatgagattccgtggctgtatttgacctgtgacctcccaccctcgcctctgt acccggatgaactcagggagaacatcataccacaggttccctttgccactctactgtccaagtttaacggagtctcggag aaggaatacaagactcaccgtgactcgcatctcaaacgatttgtcatcacccatctcccacagtacatcatcatctttat caagagatttacaaagaattatttcatcaaagagaagaacaacactatagtgaattttcctattaaaaacattgactttg gagacctcttaccaccggaagaaagagtgaagcataagtgtaccacatacgatctaatggcaaatgtagtacatgatgga ctaccagagagaggcaagggtacttacaggtgtcacgttctacataagggtactcagaaatggtttgagctgcaggattt acacgtgacggagatccttcctcagatgatacccctgtcagagagctacatacagatatttgagttgaggaaggacatac ccaatccaatgtatggcaaggatcccaaagacgtggtcagtcaggatatgtacatggacactcaggacagatga |
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Protein
| Protein ID | pfu_aug2.0_267.1_23783.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_267.1_23783.t1 MDECAXSVLDFDFEKLCSVSLSHINVYACMVCGKYFQGRGKMSHAYTHSVQEGHHVYLNLQTQKFYCLPDNYQIIDSSLE DIIYVLNPTFTTEAISVLDTNSKLSRAYDGTTYLPGVVGLNNIKENDYCNVILQAFAHVSPLRNYFLQEESYKKIKRPPG DIMITLVQRFGEFLRKLWNPRNFKAHVSPHEMLQAVVLCSKKKFQITEQGDALEFMSWILNALHLALNGSRKLSSSIINK TFRGKMRVYTRKVLPIDLKDEEKAKLLETGEYMETMDEIPWLYLTCDLPPSPLYPDELRENIIPQVPFATLLSKFNGVSE KEYKTHRDSHLKRFVITHLPQYIIIFIKRFTKNYFIKEKNNTIVNFPIKNIDFGDLLPPEERVKHKCTTYDLMANVVHDG LPERGKGTYRCHVLHKGTQKWFELQDLHVTEILPQMIPLSESYIQIFELRKDIPNPMYGKDPKDVVSQDMYMDTQDR |
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