Gene
| Gene Model ID | pfu_aug2.0_269.1_30532 |
|---|---|
| Locus | scaffold269.1 : 60750 ... 83145 : - |
| To GenomeBrowser | scaffold269.1:60750..83145 |
| Genes list of scaffold | scaffold269.1 |
| Synonym | pfu_aug1.0_3949.1_08773 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_269.1_30532.t1 | 8 | 1 | PDZ | 37 | 116 | 0.0 | 317.4 | 2.1e-15 | 1.0e-11 | 44.8 |
| pfu_aug2.0_269.1_30532.t1 | 8 | 1 | PDZ_2 | 72 | 106 | 7.60064e-42 | 141.0 | 0.0012 | 5.8 | 6.8 |
| pfu_aug2.0_269.1_30532.t1 | 8 | 2 | PDZ | 138 | 218 | 0.0 | 317.4 | 3.9e-16 | 1.9e-12 | 47.1 |
| pfu_aug2.0_269.1_30532.t1 | 8 | 2 | PDZ_2 | 161 | 219 | 7.60064e-42 | 141.0 | 1.8e-09 | 8.9e-06 | 25.5 |
| pfu_aug2.0_269.1_30532.t1 | 8 | 3 | PDZ | 293 | 375 | 0.0 | 317.4 | 1.0e-16 | 5.1e-13 | 49.0 |
| pfu_aug2.0_269.1_30532.t1 | 8 | 3 | PDZ_2 | 317 | 375 | 7.60064e-42 | 141.0 | 5.8e-10 | 2.9e-06 | 27.0 |
| pfu_aug2.0_269.1_30532.t1 | 8 | 4 | PDZ | 395 | 473 | 0.0 | 317.4 | 7.3e-08 | 0.00036 | 20.6 |
| pfu_aug2.0_269.1_30532.t1 | 8 | 4 | PDZ_2 | 403 | 447 | 7.60064e-42 | 141.0 | 0.0026 | 13.0 | 5.7 |
| pfu_aug2.0_269.1_30532.t1 | 8 | 5 | PDZ_2 | 597 | 641 | 7.60064e-42 | 141.0 | 0.0001 | 0.51 | 10.2 |
| pfu_aug2.0_269.1_30532.t1 | 8 | 5 | PDZ | 606 | 662 | 0.0 | 317.4 | 9.5e-13 | 4.7e-09 | 36.3 |
| pfu_aug2.0_269.1_30532.t1 | 8 | 6 | PDZ | 686 | 754 | 0.0 | 317.4 | 1.6e-13 | 7.7e-10 | 38.8 |
| pfu_aug2.0_269.1_30532.t1 | 8 | 6 | PDZ_2 | 687 | 760 | 7.60064e-42 | 141.0 | 2.7e-08 | 0.00013 | 21.7 |
| pfu_aug2.0_269.1_30532.t1 | 8 | 7 | PDZ | 773 | 850 | 0.0 | 317.4 | 7.8e-17 | 3.9e-13 | 49.3 |
| pfu_aug2.0_269.1_30532.t1 | 8 | 7 | PDZ_2 | 782 | 859 | 7.60064e-42 | 141.0 | 1.1e-07 | 0.00056 | 19.7 |
| pfu_aug2.0_269.1_30532.t1 | 8 | 8 | PDZ | 1078 | 1132 | 0.0 | 317.4 | 9.0e-10 | 4.4e-06 | 26.7 |
| pfu_aug2.0_269.1_30532.t1 | 8 | 8 | PDZ_2 | 1086 | 1130 | 7.60064e-42 | 141.0 | 2.6e-06 | 0.013 | 15.3 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_269.1_30532.t1 | gi|676467742|ref|XP_009057986.1| | hypothetical protein LOTGIDRAFT_91696, partial [Lottia gigantea] | 0.0 |
| pfu_aug2.0_269.1_30532.t1 | gi|513205324|ref|XP_004944665.1| | PREDICTED: glutamate receptor-interacting protein 2 isoform X9 [Gallus gallus] | 0.0 |
| pfu_aug2.0_269.1_30532.t1 | gi|573886688|ref|XP_006631141.1| | PREDICTED: glutamate receptor-interacting protein 2-like [Lepisosteus oculatus] | 0.0 |
| pfu_aug2.0_269.1_30532.t1 | gi|513205336|ref|XP_004944669.1| | PREDICTED: glutamate receptor-interacting protein 2 isoform X13 [Gallus gallus] | 0.0 |
| pfu_aug2.0_269.1_30532.t1 | gi|513205333|ref|XP_004944668.1| | PREDICTED: glutamate receptor-interacting protein 2 isoform X12 [Gallus gallus] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_269.1_30532.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_269.1_30532.t1 atggacacctctcctggtcagctcaagggagttcgctacaagtcaacagctgatggagtaatagatttaggagttcatgt ggaggatgatcacaggggcatagctacagttgaattatataaagtttctgggagtggattgggattaatagttgcaggtg gaacagataaagactcacctccccatatttcaagtttcagaattggagggatagctcacagatctgatgctctgtctata ggtgataacatagtatcagtgaatggtataagaacttccggcatgaagcatgatgaagtgataaacctgataaagaacgc ggaggatcacgtgatactagaggtggaataccaattgcctgacactactttttgtagttcccattcagtacagagtaagc agcatgagattgtattggacagagacggtagcagctttggctttacattaaggggaggctaccatgaactccagcacaag gcacgtccactggtggtcactaatatcagacctgggggacccgctgatagagagggttccatgaagataggggacagaat tctggctgtaaatgattacaacgtggctcacttcagtctgtcggaggtatcccgattcctacatgctagtggtgatgatg ttgaactcaccttggaatacgatgtatctatcatggatgttgtaaggaatgcccagggtcctttgttggtggagatagat aagccccctgggtgtgacctcggtatagggctggcacagacatcacataagggtgtccgttgtctgtgtgtggaatcagt tcatccaatgagcactgctgacaggtgtctgctgtctttttgtagttcccattcagtacagagtaagcagcatgagattg tattggaaagagatggtagcagctttggctttacattaaggggaggctaccatgaactgcagcacaaggcgcgtccactg gtggtcactaatatcagacctgggggacccgctgatagagagggttccatgaagataggggacagaattctggctgtaaa tgattacaacgtggctcacttcagtctgtcggaggtatcccgattcctacatgctagtggtgatgatgtagaactcacag tggaatacgatgtatctatcatggatgttgtaaggaatgcccagggtcctttgttggtggagatagataagccccctggg tgtgacctgggtatagggctggcacagacatcacataagggtgtccgttgtctgtgtgtggaatcagtacatccaatgag cactgccgacagatgtggagctgtgaatattggtgatcacatactgtgtatagatgggtgttttactgagcacatgtcca ttgctgaggcaaatcaactactacgatctaacgctgatgatatgatcaaactagaaatactacccgtccgaattgtggag caacaaaactccagagatagtataaataaaaatggaatcattgtgggaacagggcgactgagcgtgcccagtatgtcgtc tgctgcttcctttcctgctctaccctcctccctatccactcctttaggacttgccaataataaggccatggggtctacta tatcttcagctccttttggttccaacaccctgcgcaggtcaggacgtaagtctgccatgtacgtggtcgacaggaagcag tcatcctgtatgtccatttcctcgacggctacgtcagtgatggtcaataaccaggtatgtcacagtgagacggtagacgt accgttagtgggtgacagtcgtgggataggcctgatcatagacagcagtatgggggagtgtctggttgtgtcggcaatcg tccctggtggagtagctgaaaggtgtggtgttatacaagagggggatcgtatagtgtcatacaatggacaggacgtatat aatatgttagcggaggatgtcaacaagtggttacgggaacctcgacaaagatgtgagctacaaatagaatttgatgtcac ggaatcagtaatgcccagctctggagtgttcatagtcaaactgcctaactacccaaaggacataggattgtctgtcaatg ttacgagaaaccatgatctgacaataacaaacgtgaagaaaggcagtatagcgtacaggtgtggatccctacagagggga gataggatactagctatcggtgaccaaggtactgagggtctgtcactggatgaagccatgctcctactacaatcagctga ggatatcatcaaactaaagctgagacgagaggaaaaagagagtgatgaggtaaatgatgatagtacagtgtacactgtag aactgcaaagacgtggcggccccctcggtattacaatatcagggacagataacccaggcgatcccattgtaatttctgat atcattccaaaaggcctagcagacagaactggtgccattcatataggagatttactactggctataaataacatgtctac gaaaggtagaacattaacagaggcaactgtcatgctgcagaatgctggggatttagtcaacctcaaaatagccagacctc aggaactatcgaaattaaaaagcaagagaggattatttaatgatagatccacaaccaaggctggtagtgtagatagtgcc atggaatcctgggatagcttgttacatgatacgggtaactatggtaaccatgccagtggccataacttacagggtactaa tatgtcagtcgctaaaccagcccccagaaaacagagttcaaaaagctcaaagtcagtgtttagcagtcagccttcaaatt ccatttgtgcaagccgagacagactgacagacctcagttactcggatacagactgggataaccttagtaacggtagtcat agcaaccaagattacggtgaagaggaagcgttagaatgggtcaagaaatgtcaggagtacgctaactcagaaatgctaca gcagataagtcagagtctacaacaaaaaagtacggctagtctcgacagaaggtcaaggtcatctgatggaaggtcaaagg tcaaacatagtctgaatgatgaaactaaaaaaagttttgtaagtgaagtagagcttcagagagctgtaagtaaagacagg aagaagagtcggccagtcagagcgtctaaatctaacgctgagatgtatcaaaaccatgtaaaaaccatattttctccctc cccagtacagctccataagataaagctagtgaaggtctcaccgtcagaggattttgggtttggactgtcagatgggatgt atgagaagggtgtgtacatcagtggtgtgagggagggcagcattgctgatatggctggactgcgtcagtttgacagaata ctacagataaatgggaaaagaactcgagattttgattgttctttaaccattcccttgatagccgaggcaggcagcaaaat gtcgttgatatag |
|
Protein
| Protein ID | pfu_aug2.0_269.1_30532.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_269.1_30532.t1 MDTSPGQLKGVRYKSTADGVIDLGVHVEDDHRGIATVELYKVSGSGLGLIVAGGTDKDSPPHISSFRIGGIAHRSDALSI GDNIVSVNGIRTSGMKHDEVINLIKNAEDHVILEVEYQLPDTTFCSSHSVQSKQHEIVLDRDGSSFGFTLRGGYHELQHK ARPLVVTNIRPGGPADREGSMKIGDRILAVNDYNVAHFSLSEVSRFLHASGDDVELTLEYDVSIMDVVRNAQGPLLVEID KPPGCDLGIGLAQTSHKGVRCLCVESVHPMSTADRCLLSFCSSHSVQSKQHEIVLERDGSSFGFTLRGGYHELQHKARPL VVTNIRPGGPADREGSMKIGDRILAVNDYNVAHFSLSEVSRFLHASGDDVELTVEYDVSIMDVVRNAQGPLLVEIDKPPG CDLGIGLAQTSHKGVRCLCVESVHPMSTADRCGAVNIGDHILCIDGCFTEHMSIAEANQLLRSNADDMIKLEILPVRIVE QQNSRDSINKNGIIVGTGRLSVPSMSSAASFPALPSSLSTPLGLANNKAMGSTISSAPFGSNTLRRSGRKSAMYVVDRKQ SSCMSISSTATSVMVNNQVCHSETVDVPLVGDSRGIGLIIDSSMGECLVVSAIVPGGVAERCGVIQEGDRIVSYNGQDVY NMLAEDVNKWLREPRQRCELQIEFDVTESVMPSSGVFIVKLPNYPKDIGLSVNVTRNHDLTITNVKKGSIAYRCGSLQRG DRILAIGDQGTEGLSLDEAMLLLQSAEDIIKLKLRREEKESDEVNDDSTVYTVELQRRGGPLGITISGTDNPGDPIVISD IIPKGLADRTGAIHIGDLLLAINNMSTKGRTLTEATVMLQNAGDLVNLKIARPQELSKLKSKRGLFNDRSTTKAGSVDSA MESWDSLLHDTGNYGNHASGHNLQGTNMSVAKPAPRKQSSKSSKSVFSSQPSNSICASRDRLTDLSYSDTDWDNLSNGSH SNQDYGEEEALEWVKKCQEYANSEMLQQISQSLQQKSTASLDRRSRSSDGRSKVKHSLNDETKKSFVSEVELQRAVSKDR KKSRPVRASKSNAEMYQNHVKTIFSPSPVQLHKIKLVKVSPSEDFGFGLSDGMYEKGVYISGVREGSIADMAGLRQFDRI LQINGKRTRDFDCSLTIPLIAEAGSKMSLI |
|