Gene
| Gene Model ID | pfu_aug2.0_269.1_30540 |
|---|---|
| Locus | scaffold269.1 : 225538 ... 235359 : + |
| To GenomeBrowser | scaffold269.1:225538..235359 |
| Genes list of scaffold | scaffold269.1 |
| Synonym | pfu_aug1.0_9789.1_02805 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_269.1_30540.t1 | 2 | 1 | HMG_CoA_synt_N | 12 | 150 | 0.0 | 254.2 | 0.0 | 0.0 | 253.7 |
| pfu_aug2.0_269.1_30540.t1 | 3 | 1 | HMG_CoA_synt_C | 154 | 206 | 0.0 | 249.5 | 1.8e-28 | 1.4e-24 | 87.1 |
| pfu_aug2.0_269.1_30540.t1 | 3 | 2 | HMG_CoA_synt_C | 205 | 245 | 0.0 | 249.5 | 3.1e-13 | 2.3e-09 | 37.1 |
| pfu_aug2.0_269.1_30540.t1 | 2 | 2 | HMG_CoA_synt_N | 224 | 245 | 0.0 | 254.2 | 1.1 | 8200.0 | -3.9 |
| pfu_aug2.0_269.1_30540.t1 | 3 | 3 | HMG_CoA_synt_C | 256 | 363 | 0.0 | 249.5 | 2.9e-40 | 2.1e-36 | 125.8 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_269.1_30540.t1 | gi|701415625|ref|XP_009999463.1| | PREDICTED: hydroxymethylglutaryl-CoA synthase, cytoplasmic [Chaetura pelagica] | 0.0 |
| pfu_aug2.0_269.1_30540.t1 | gi|524914499|ref|XP_005112064.1| | PREDICTED: hydroxymethylglutaryl-CoA synthase, cytoplasmic-like isoform X1 [Aplysia californica] | 0.0 |
| pfu_aug2.0_269.1_30540.t1 | gi|676422346|ref|XP_009043946.1| | hypothetical protein LOTGIDRAFT_102908 [Lottia gigantea] | 0.0 |
| pfu_aug2.0_269.1_30540.t1 | gi|524914501|ref|XP_005112065.1| | PREDICTED: hydroxymethylglutaryl-CoA synthase, cytoplasmic-like isoform X2 [Aplysia californica] | 0.0 |
| pfu_aug2.0_269.1_30540.t1 | gi|657567306|ref|XP_008287032.1| | PREDICTED: hydroxymethylglutaryl-CoA synthase, cytoplasmic [Stegastes partitus] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_269.1_30540.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_269.1_30540.t1 atgccaggcccagcaaagatggcgaaaacacaatggccagaagatattgggatcattgccatggaaatatacttcccttc gcaatatgttgaccaatcagaacttgaggattttgatgaaatttcgaaagggaaatacactataggcttgggacagtcta agatgggcttctgttctgacagagaagacattaactccttgtcattgactgttgtacagatgttaatggaaaaaaacaaa attccgtatttacaaatcggacacctaggagtgggaacggaaactatcatagacaagtcaaaaagtgtcaaaagtgtggt tatgcagttgtttgaagacagcgggaacacaaacattgagggtgttgacacaacaaacgcatgttacggaggaactgctg ctttgtttaatgccatcaactggatcgagtccagctcatgggatgtgaataaaccccttcagtttgatctaggtgtaaga ggtatacacatgcagcatgtgtatgatttctataagccagacctgtcctcggagtatccagttgtagacgggaagttatc tgtgaaatgttaccaacacgctgtagataagtgctacgaacattactcaacaaagaaaacaaagccgtctttgttactag ctaaccaagtgggcaatatgtacacaccctcggtttatggtggacttgcatcttttatcgtccaacgacaatgggcagaa cttgacagactggatgtttgttggagattttacagcatttcaacagtagaagatctagcagggaaaagactagtgttgtt ttcatacggatctggactagcatcgtctatgttttcaataaaagttacagataatgtggcccatgattctgcattacata aagtttatgaaaatctatcagacattcctttcaaactaggaaataggattaaaataccacctgtagaatttgataaaatc atgaaattacgtgaggaaacgcataatgcagctccatatactcctactggatcagtagatcatttatttcctggtacgtg gtacctaacaagtatagacaacatgcatagacggaaatatgaacggaaaccatcacagtcaatagtaaatggtgatgtag cggtgaactgtgctagcatgccgaggaattcaagtttgacaaaaccatctcccatcccaccagcattaaatacagattca acgctgcagtcctag |
|
Protein
| Protein ID | pfu_aug2.0_269.1_30540.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_269.1_30540.t1 MPGPAKMAKTQWPEDIGIIAMEIYFPSQYVDQSELEDFDEISKGKYTIGLGQSKMGFCSDREDINSLSLTVVQMLMEKNK IPYLQIGHLGVGTETIIDKSKSVKSVVMQLFEDSGNTNIEGVDTTNACYGGTAALFNAINWIESSSWDVNKPLQFDLGVR GIHMQHVYDFYKPDLSSEYPVVDGKLSVKCYQHAVDKCYEHYSTKKTKPSLLLANQVGNMYTPSVYGGLASFIVQRQWAE LDRLDVCWRFYSISTVEDLAGKRLVLFSYGSGLASSMFSIKVTDNVAHDSALHKVYENLSDIPFKLGNRIKIPPVEFDKI MKLREETHNAAPYTPTGSVDHLFPGTWYLTSIDNMHRRKYERKPSQSIVNGDVAVNCASMPRNSSLTKPSPIPPALNTDS TLQS |
|