Gene
| Gene Model ID | pfu_aug2.0_269.1_30545 |
|---|---|
| Locus | scaffold269.1 : 378285 ... 388402 : - |
| To GenomeBrowser | scaffold269.1:378285..388402 |
| Genes list of scaffold | scaffold269.1 |
| Synonym | pfu_aug1.0_476965.1_36142 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_269.1_30545.t1 | 1 | 1 | COX5B | 3 | 101 | 1.8e-19 | 69.7 | 2.9e-23 | 2.2e-19 | 69.4 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_269.1_30545.t1 | gi|383850220|ref|XP_003700694.1| | PREDICTED: cytochrome c oxidase subunit 5B, mitochondrial-like [Megachile rotundata] | 1.0e-23 |
| pfu_aug2.0_269.1_30545.t1 | gi|391343708|ref|XP_003746148.1| | PREDICTED: cytochrome c oxidase subunit 5B, mitochondrial-like [Metaseiulus occidentalis] | 3.0e-23 |
| pfu_aug2.0_269.1_30545.t1 | gi|260827379|ref|XP_002608642.1| | hypothetical protein BRAFLDRAFT_172198 [Branchiostoma floridae] | 1.0e-22 |
| pfu_aug2.0_269.1_30545.t1 | gi|524887834|ref|XP_005100500.1| | PREDICTED: cytochrome c oxidase subunit 5B, mitochondrial-like [Aplysia californica] | 3.0e-22 |
| pfu_aug2.0_269.1_30545.t1 | gi|380028383|ref|XP_003697883.1| | PREDICTED: cytochrome c oxidase subunit 5B, mitochondrial-like [Apis florea] | 1.0e-20 |
Transcript
| Transcript ID | pfu_aug2.0_269.1_30545.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_269.1_30545.t1 atttggaatcgggtacatttgaagcaggtgtccctagtggtggtggccatagggttggcctagaaaaatgggaaatatca gccattgagcaagacataatggatccatttggtatagaaaccagagttatgacggaaggaacattcgatcacccaaatat agtaccatctgttgaaagtagaagagtaattggttgcatatgtgaccctgattccgatgaagttgtttggacctggctag agaaaggtgagcccagacgctgcatgtgcggtcattggttcaaactcgtggaggtagatgaagaagacatccccaaataa |
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Protein
| Protein ID | pfu_aug2.0_269.1_30545.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_269.1_30545.t1 LESGTFEAGVPSGGGHRVGLEKWEISAIEQDIMDPFGIETRVMTEGTFDHPNIVPSVESRRVIGCICDPDSDEVVWTWLE KGEPRRCMCGHWFKLVEVDEEDIPK |
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