Gene
| Gene Model ID | pfu_aug2.0_27.1_23258 |
|---|---|
| Locus | scaffold27.1 : 86776 ... 109999 : + |
| To GenomeBrowser | scaffold27.1:86776..109999 |
| Genes list of scaffold | scaffold27.1 |
| Synonym | pfu_aug1.0_14142.1_61311 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_27.1_23258.t1 | 2 | 1 | Peptidase_C2 | 104 | 164 | 0.0 | 227.0 | 8.4e-17 | 1.8e-13 | 50.1 |
| pfu_aug2.0_27.1_23258.t1 | 2 | 2 | Peptidase_C2 | 168 | 349 | 0.0 | 227.0 | 0.0 | 0.0 | 175.2 |
| pfu_aug2.0_27.1_23258.t1 | 3 | 1 | EF-hand_8 | 225 | 234 | 5.0e-06 | 26.0 | 3.8 | 8000.0 | -3.5 |
| pfu_aug2.0_27.1_23258.t1 | 1 | 1 | Calpain_III | 359 | 503 | 0.0 | 156.7 | 0.0 | 0.0 | 155.8 |
| pfu_aug2.0_27.1_23258.t1 | 3 | 1 | EF-hand_7 | 395 | 405 | 4.3e-07 | 29.9 | 4.1 | 8700.0 | -3.1 |
| pfu_aug2.0_27.1_23258.t1 | 4 | 1 | EF-hand_1 | 396 | 408 | 1.6e-08 | 33.2 | 0.27 | 560.0 | 0.2 |
| pfu_aug2.0_27.1_23258.t1 | 5 | 1 | EF-hand_6 | 399 | 405 | 1.1e-07 | 31.1 | 7.0 | 15000.0 | -3.7 |
| pfu_aug2.0_27.1_23258.t1 | 5 | 2 | EF-hand_6 | 533 | 557 | 1.1e-07 | 31.1 | 0.022 | 47.0 | 4.2 |
| pfu_aug2.0_27.1_23258.t1 | 3 | 2 | EF-hand_8 | 543 | 598 | 5.0e-06 | 26.0 | 2.3e-07 | 0.00049 | 19.6 |
| pfu_aug2.0_27.1_23258.t1 | 4 | 2 | EF-hand_1 | 546 | 557 | 1.6e-08 | 33.2 | 3.7 | 7800.0 | -3.4 |
| pfu_aug2.0_27.1_23258.t1 | 3 | 2 | EF-hand_7 | 547 | 597 | 4.3e-07 | 29.9 | 5.7e-05 | 0.12 | 12.5 |
| pfu_aug2.0_27.1_23258.t1 | 4 | 3 | EF-hand_1 | 576 | 599 | 1.6e-08 | 33.2 | 1.7e-05 | 0.037 | 13.3 |
| pfu_aug2.0_27.1_23258.t1 | 5 | 3 | EF-hand_6 | 576 | 596 | 1.1e-07 | 31.1 | 0.0017 | 3.7 | 7.6 |
| pfu_aug2.0_27.1_23258.t1 | 4 | 4 | EF-hand_1 | 604 | 628 | 1.6e-08 | 33.2 | 1.0e-05 | 0.021 | 14.0 |
| pfu_aug2.0_27.1_23258.t1 | 5 | 4 | EF-hand_6 | 604 | 629 | 1.1e-07 | 31.1 | 6.2e-07 | 0.0013 | 18.4 |
| pfu_aug2.0_27.1_23258.t1 | 3 | 3 | EF-hand_7 | 604 | 668 | 4.3e-07 | 29.9 | 3.2e-06 | 0.0067 | 16.5 |
| pfu_aug2.0_27.1_23258.t1 | 3 | 3 | EF-hand_8 | 607 | 625 | 5.0e-06 | 26.0 | 0.038 | 80.0 | 2.9 |
| pfu_aug2.0_27.1_23258.t1 | 5 | 5 | EF-hand_6 | 651 | 661 | 1.1e-07 | 31.1 | 2.1 | 4500.0 | -2.0 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_27.1_23258.t1 | gi|557328065|ref|XP_006036970.1| | PREDICTED: calpain-3 isoform X4 [Alligator sinensis] | 0.0 |
| pfu_aug2.0_27.1_23258.t1 | gi|527251324|ref|XP_005143968.1| | PREDICTED: calpain-3 isoform X4 [Melopsittacus undulatus] | 0.0 |
| pfu_aug2.0_27.1_23258.t1 | gi|350413587|ref|XP_003490043.1| | PREDICTED: calpain-A-like isoform X9 [Bombus impatiens] | 0.0 |
| pfu_aug2.0_27.1_23258.t1 | gi|350413591|ref|XP_003490045.1| | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_27.1_23258.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_27.1_23258.t1 atggcttttcatccatcgaaccaaaggtactcgcgatttccagtgaatgacagatcaaaatcaggcagtgccagcaactc acccggttcaaacccgggttatgcgaacaccagtgctgtggtaaaccatgtaaatcatgaacccccatacgcactccccc accagttccacaacggtgtgccactagataaactacaccatgtgggcgtgacccagccattcgcgcgagagactgagtcc cacagcagacaccacagggggaaaagtaactttgataatatcagatctgagtgcttgaggaaaggagccctttttgaaga tcctgacttcctagctcatgattcttccatttattacagtcgtgcggcaccatttaggatagaatggaaaagacctgggg agatagcaggtcagtacagattgagaccggcttttattctggacggtgcacaaagatttgatgtcgtacaaggagatcta ggcatatgcaaagtaagtgtacaaggcgaaacgtatctggaagtactactggaaaaggcatacacaaaaatgtatggatc ttatgaagccttgaaatcaggaactgtaggagacgcccttatcgactttaccgggggaacgtgtgagagctacacgctac gaagtgactacgagaatgtacctaggaatatagtcaacatcttatttaaggccttagacaggcagtctctcataggatgt ggtattaatcctttgaaaaaacaaaaagagacaaagttgtcaaatggcttagtggccggacatgcatacagtatcacaga tttaagagagattctattgatgacagagactggagagatccccattacattaatcagagtacgtaatccgtggggtgaca aagtggaatggaaaggtccatggggagatgaatctcgagaatggaagagtataccgcaggcggagagagataacatggga ttggtgtatagagacgatggggagttctggatggaatttaaggattttcagaagaattttgacacattagatatctgtaa tctgacacctgatgccccagttgagatgccgaagcaatggcacacggcagaataccacaacagatggcaacgcggatata atgctgggggaaggcaaattcatactaatacccactggacaaacccacagtacaaagtaacgttatcagacgtagatgag gacggggacaatgtgtgtagcttccttgtacaactgatgcagaaagatcgacggagaatgagacaaaaaggcagaaaata cctctatataggattcctgatatataaggttatgaaaggatatactgtgccatttaaaaaagatttctttgagtccaatc agagtgtagagtctagtggtcactttataaacatgagacagcgggtggccagaatgaccctctctccaggcgagtatgtt gtggtaccctgtacatgggatcctaatgaagaaggagatttctacctcagaatattctttgagaatcgaggaagggcaga agaggcggatgagttatcagggagagatgaagtcccgttacccagcactcctgttgaacacggtacagaagataccttca aacgtatgttcttcaacttctctggagaagatatggagttatctccccatgaactggtcaaagtccttaatgatgtactc aaaaaagagcctctccattcagatgtcacgatagacgcctgtaaatcatttgtctcactgttagatgtagataattcagg gaagttaggttacacagaattcctgtatttatggaatcttctaaggagctggaagaagctgttttaccagtatgatgtag ataagtcagggatgttaaactcgttcgagcttcggagagtccttggtgctgcaggttatcgagtaaacaacagaacgatg caagataattactttacttgcctcaccagattcatgaagctgttcaatgactataacaaatcaaagcagacagatggaaa actgaatctctcactaaacgagttgcttactatggcagttctatga |
|
Protein
| Protein ID | pfu_aug2.0_27.1_23258.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_27.1_23258.t1 MAFHPSNQRYSRFPVNDRSKSGSASNSPGSNPGYANTSAVVNHVNHEPPYALPHQFHNGVPLDKLHHVGVTQPFARETES HSRHHRGKSNFDNIRSECLRKGALFEDPDFLAHDSSIYYSRAAPFRIEWKRPGEIAGQYRLRPAFILDGAQRFDVVQGDL GICKVSVQGETYLEVLLEKAYTKMYGSYEALKSGTVGDALIDFTGGTCESYTLRSDYENVPRNIVNILFKALDRQSLIGC GINPLKKQKETKLSNGLVAGHAYSITDLREILLMTETGEIPITLIRVRNPWGDKVEWKGPWGDESREWKSIPQAERDNMG LVYRDDGEFWMEFKDFQKNFDTLDICNLTPDAPVEMPKQWHTAEYHNRWQRGYNAGGRQIHTNTHWTNPQYKVTLSDVDE DGDNVCSFLVQLMQKDRRRMRQKGRKYLYIGFLIYKVMKGYTVPFKKDFFESNQSVESSGHFINMRQRVARMTLSPGEYV VVPCTWDPNEEGDFYLRIFFENRGRAEEADELSGRDEVPLPSTPVEHGTEDTFKRMFFNFSGEDMELSPHELVKVLNDVL KKEPLHSDVTIDACKSFVSLLDVDNSGKLGYTEFLYLWNLLRSWKKLFYQYDVDKSGMLNSFELRRVLGAAGYRVNNRTM QDNYFTCLTRFMKLFNDYNKSKQTDGKLNLSLNELLTMAVL |
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